CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            F+PEFLNR D +I FR L K  + +I  ++L E+ + L  + I L             GY+PS+GARPLRR I   +ED M + +L
Sbjct:  592 FKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGELEETLAERGISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDLLL 677          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_TROWT (Chaperone protein clpB OS=Tropheryma whipplei (strain Twist) GN=clpB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNRLDE+++F  L++ ++ +I D+ ++ +  R+K + I +             GY+  YGARPLRR I R +ED +A+ ++
Sbjct:  595 FRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLII 680          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_TROW8 (Chaperone protein clpB OS=Tropheryma whipplei (strain TW08/27) GN=clpB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNRLDE+++F  L++ ++ +I D+ ++ +  R+K + I +             GY+  YGARPLRR I R +ED +A+ ++
Sbjct:  589 FRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLII 674          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.892e-12
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPE +NR+DE++VF  L +  ++ IA I LK +  RL+ +++ L             G++P YGARPL+RAI   +E+ +A+ +LA
Sbjct:  752 FRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLA 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RICTY (Chaperone protein clpB OS=Rickettsia typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNRLDE+I+F +L +  + +I  I L  +   L  ++I L+            GY+PS+GARPL+R I R +++++A+ +LA +I
Sbjct:  748 FKPEFLNRLDEIILFHRLNRNNIYDIVKIQLGSLKKILLQQNIILEFNESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGKI 837          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEF+NR+DE++VF  L +  +K IA I L  +  RL   +++L             G++P +GARPL+RAI   +E+ +A+++L
Sbjct:  753 FRPEFINRIDEVVVFHALGEAHIKSIARIQLSNLGKRLAQMEMKLVVSEPALTKLAEVGFDPVFGARPLKRAIQAQIENPLAKELL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 275
            FRPEFLNR+DE+++F+ L + ++  I  + L  V  RL+ K I +             GY+P YGARPL+R I   L + +++++++ ++K
Sbjct:  749 FRPEFLNRIDEIVMFKSLGEAQISGIVKVQLDLVAQRLRAKKIGIDFNQEAIDFLAKKGYDPIYGARPLKRVIQTELLNPLSKEIISGKVK 839          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: HSP78_YEAST (Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae GN=HSP78 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 275
            + PEF+NR+D+++VF +L+K  ++ I DI + E+ DRL  K +++             GY+  YGARPL R I R + +SMA  +L  +I+
Sbjct:  689 YPPEFINRIDDILVFNRLSKKVLRSIVDIRIAEIQDRLAEKRMKIDLTDEAKDWLTDKGYDQLYGARPLNRLIHRQILNSMATFLLKGQIR 779          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 3
Query:    6 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            +PEF+NRLDE ++FR L K  + EI  + + ++  RLK   + L             G++P  GARPLRR I + LED +AE +L    ++
Sbjct:  721 KPEFINRLDESVIFRPLEKESLSEIIHLEINKLDSRLKNYQMALNIPDSVISFLVTKGHSPEMGARPLRRVIEQYLEDPLAELLLKESCRQ 811          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPE (Chaperone protein clpB OS=Mycoplasma penetrans GN=clpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNR+DE+I F  +T    KEIA  ML ++  RLK  + ++             GY+  YGARP+ R I + +E+ + E +L  E+
Sbjct:  595 FKPEFLNRIDEIIKFNSITMEFAKEIAQKMLDDLEKRLKDNNYQITFDKSVVEYVAKNGYSKEYGARPINRFIQKTIENFITESILKNEL 684          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPE_BACSU6.809e-1240.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_TROWT6.809e-1238.37Chaperone protein clpB OS=Tropheryma whipplei (str... [more]
CLPB_TROW86.809e-1238.37Chaperone protein clpB OS=Tropheryma whipplei (str... [more]
CLPB_NEIMB8.892e-1239.08Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_RICTY1.161e-1138.89Chaperone protein clpB OS=Rickettsia typhi GN=clpB... [more]
CLPB_NITEU1.161e-1138.37Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_BDEBA1.161e-1135.16Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
HSP78_YEAST1.517e-1137.36Heat shock protein 78, mitochondrial OS=Saccharomy... [more]
CLPC_CHLPN1.517e-1137.36Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_MYCPE1.981e-1137.78Chaperone protein clpB OS=Mycoplasma penetrans GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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