CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9716 contig Csv1_Contig9716:388..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 30/90 (33.33%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNR+D+ I+F+ L   ++K I   M  ++  RL+  D++L+             Y P+YGARPL+R + +++E+ +A+ ++  +I
Sbjct:  754 FKPEFLNRIDDTILFKPLALEDIKNIIVKMTSQLSHRLEEMDVQLELSEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKI 843          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE +VF  L +  ++ IA+I L+ +  RL  +  ++             G++  +GARPL+RAI + LE+ +A+++L+ ++
Sbjct:  748 FRPEFINRIDETVVFHPLDQQHIRAIANIQLQRLIRRLAERGYQVTISDTALDHISQAGFDSLFGARPLKRAIQQELENPLAQQILSGKL 837          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 3
Query:    6 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            +PEF+NRLDE ++F+ L K  + EI  + + ++  RL+   + L             G++P  GARPLRR + + LED +AE +L    ++
Sbjct:  740 KPEFINRLDESVIFKPLEKEALSEIIHLEINKLGSRLQNHQMALNIPDSVVSFLVDKGHSPEMGARPLRRVVEQYLEDPLAEMLLKESCRQ 830          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 30/90 (33.33%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNR+D+ I+F+ L   ++K I   M  ++  RL+  ++EL+             Y P+YGARPL+R + +++E+ +A+ ++  +I
Sbjct:  754 FKPEFLNRIDDTILFKPLALEDIKNIILKMTSQLAHRLEEMEVELELSEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKI 843          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+D++I+FR L + ++  I  + +  +  RL  + I L+            GY+P YGARPL+RAI   L + +A  +L  +  +
Sbjct:  757 FRPEFLNRVDDIIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEAAIDYIVEAGYDPVYGARPLKRAIQNELVNPLARGLLKGDFND 848          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_LACLA5.764e-1133.33Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_HAEDU5.764e-1134.44Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPC_CHLMU9.832e-1134.07Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_LACLM9.832e-1133.33Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_GLOVI9.832e-1135.87Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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