CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +L+K E+K+I  +M+ ++ +RL  +DI +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLSKDELKQIVTMMVNKLTNRLSEQDINISVTEAAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782
[Close]
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +L+K E+KEI  +M+ ++  RL  +DI +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLSKDELKEIVTMMVNKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPC_STAAS2.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR2.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAN2.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAM2.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAC2.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAB2.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA82.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA32.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAS12.953e-1544.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAHJ2.953e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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