CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9716 contig Csv1_Contig9716:388..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNRLD+ I+FR L K E++ I  + ++ +  RL+ + ++LQ            G++P YGARPL+RAI R LE  +A+ +LA ++ E
Sbjct:  755 FRPEFLNRLDDQIIFRSLEKEELRRIVSLQVERLRSRLEQRKLDLQLSDIAADWLATIGFDPVYGARPLKRAIQRELETPIAKAILAGQLSE 846          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.038e-15
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++  RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.038e-15
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++  RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELIL 782          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.038e-15
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 275
            FRPEF+NR+DE +VF  L +  +K IA I ++ + +RLK KD EL             G++P YGARPL+RAI + +E+ +A+++L+ +++
Sbjct:  749 FRPEFINRVDETVVFHPLGQENIKHIASIQIERLVNRLKEKDYELTVQESALDFVAKAGFDPVYGARPLKRAIQQYIENPLAQEILSGKLE 839          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.038e-15
Identity = 36/91 (39.56%), Postives = 61/91 (67.03%), Query Frame = 3
Query:    6 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            RPEF+NR+DE+IVF+ LT  E+ +I D+++  V  RL  ++I+++            GY+P++GARPL+R I + +E  +A+K++  EIK+
Sbjct:  878 RPEFINRIDEIIVFKPLTMRELSKIIDLLIANVNKRLAERNIKIELTEEAKKELVRRGYDPAFGARPLKRTIQKYVETPLADKIIRGEIKD 968          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.593e-15
Identity = 36/87 (41.38%), Postives = 62/87 (71.26%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEFLNR+DE+++F++LT+  ++ I DI L+ V +RL+++ I+L+            GY+ ++GARPL+RAI   LE+++A ++L+
Sbjct:  767 FRPEFLNRIDEVLIFKRLTRKHIRLITDIQLQMVVERLESRHIKLRVRDAAKAYLAERGYDDTFGARPLKRAIQTELENALAREILS 853          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.593e-15
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F +L + E+  I DI L+ +   L  + I L+            GY+P+YGARPL+RAI + ++D +AEK+L  E  +
Sbjct:  751 FRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELEDDARVFLADRGYDPAYGARPLKRAIQKYVQDPLAEKVLQGEFPD 842          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.122e-14
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE++VF  L +  +  IA I LK ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.122e-14
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE++VF  L +  +  IA I LK ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.122e-14
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE++VF  L +  +  IA I LK ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB1_SYNPX2.953e-1542.39Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPC_STAES5.038e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ5.038e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PHOPR5.038e-1540.66Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_AQUAE5.038e-1539.56Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPB_TREPA8.593e-1541.38Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
CLPB_RHIME8.593e-1542.39Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_SHIFL1.122e-1440.00Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_ECOLI1.122e-1440.00Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL61.122e-1440.00Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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