CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.122e-14
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE++VF  L +  +  IA I LK ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.122e-14
Identity = 34/92 (36.96%), Postives = 62/92 (67.39%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEF+NRLD++++F +L+  ++  I DI +K++ DRL  + + L+            GY+P+YGARPLRR I + + D++A+++LA  +++
Sbjct:  740 FKPEFVNRLDDVVIFDRLSPEQLTSIVDIQIKQLTDRLAGRRLNLRVSDSAKAWLAERGYDPAYGARPLRRLIQQAIGDTLAKELLAGNVRD 831          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.466e-14
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLDE I+F+ L K ++K+I  + + +V  RLK K +E++            GYNP YGARP++R I   LE  +A+ +L  + +E
Sbjct:  757 FKPEFLNRLDEQIIFKSLKKEDLKKIVKLQIDKVKARLKDKGLEIELNEKVIDWIADKGYNPIYGARPIKRIIQTKLETKLAKMILKSKSEE 848          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.466e-14
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNRLDE++VFR L + ++  I  I L+ V  RL  + I L+            GY+P +GARPL+R I R LE  ++ K+LA E+ +
Sbjct:  740 FRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQRELETPLSRKILAGEVAD 831          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.914e-14
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NRLD+++VF  L K ++K+IA I L+ +  RL   +++L             G++P YGARPL+RAI   LE+++A+++LA
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENALAQQILA 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.914e-14
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE++VF  L +  +K IA I L+ +  RL+ K  +L+            G++P YGARPL+RAI + +E+ +A+ +LA EI
Sbjct:  749 FRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSDKALDLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGEI 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.500e-14
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE++ F +L K  +++I DI L+ V +RL+ + + L+            GY+P +GARPL+RAI   LE+ +A ++L  +  E
Sbjct:  750 FRPEFLNRIDEILTFNRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSDKAKDFLADIGYDPMFGARPLKRAIQAELENKLAREVLEGKFPE 841          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.500e-14
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NR+DE +VF  L K  ++ IA I L+ +  R++T+  EL             GY+P YGARPL+RAI + +E+S+A+++L+
Sbjct:  748 FRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLDFIGEVGYDPIYGARPLKRAIQQEIENSLAQQILS 834          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.265e-14
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE++VF  L +  +  IA I L+ ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.265e-14
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE++VF  L +  +  IA I L+ ++ RL+ +  E+             GY+P YGARPL+RAI + +E+ +A+++L+ E+
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_ECO571.122e-1440.00Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_CORGL1.122e-1436.96Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB_PROMA1.466e-1441.30Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_MEIRU1.466e-1443.48Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_XYLFT1.914e-1442.53Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_VIBPA1.914e-1443.33Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_TREDE2.500e-1440.22Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_HAEIN2.500e-1442.53Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_SALTY3.265e-1438.89Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI3.265e-1438.89Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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