CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.265e-14
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEF+NR+DE +VF  L K +++ IA I +  +  RLK KD +L             GY+P YGARPL+R + + LE+ +++K+L
Sbjct:  750 FRPEFINRIDEAVVFHSLKKEQIRNIAIIQIDRIKKRLKEKDYQLTISDDALDYLSELGYDPVYGARPLKRVLQQQLENPLSQKIL 835          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NRLD+++VF  L K ++K+IA I L+ +  RL   +++L             G++P YGARPL+RAI   LE+ +A+++LA
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILA 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD++I+F  L   ++ EI +IM + + ++LK + I L+            G++P YGARPL+RA+   +ED +AE +L  +I E
Sbjct:  749 FKPEFLNRLDDIIIFNPLGLAQIVEIVEIMFEGIREKLKERQITLELTQSAKEQIAEVGFDPVYGARPLKRALYEEVEDRLAELILEDKISE 840          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 34/92 (36.96%), Postives = 61/92 (66.30%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEF+NRLD+++VF  L++ ++  I +I + ++ +RL  + + L+            GY+P+YGARPLRR I + + D +A+++LA EI++
Sbjct:  740 FKPEFINRLDDIVVFDPLSQEQLASIVEIQISQLAERLSDRRLTLRVSDAAKLWLAERGYDPAYGARPLRRLIQQAIGDQLAKELLAGEIRD 831          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD++I+F+ LT  E+ +I DI L+++ +RLK ++I L             GY+  YGARPL+R I  +LE  +A++++  +I E
Sbjct:  756 FKPEFLNRLDDIIMFKPLTNREITKIIDIFLQDIENRLKDRNITLIVTENAKELMAKEGYDAIYGARPLKRYIENILETKIAKQIIKGDIYE 847          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.570e-14
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F+ LT  E+K I D ++KE+  RL  + I ++            G++P YGARPL+R + R +E  +A +++A  I +
Sbjct:  757 FRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIASTITD 848          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F+ LT  E+K I D ++KE+  RL  + I ++            G++P YGARPL+R + R +E  +A +++A  I +
Sbjct:  757 FRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITD 848          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+D++I+F +L + E+  I +I LK +   L  + I L+            GY+P+YGARPL+R I + ++D +AE +L  EI +
Sbjct:  751 FRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPD 842          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NR+DE IVF  L K  +  IA I L+ +  RL+T+++ L             GY+P +GARPL+RAI   +E+ +A+ +LA
Sbjct:  753 FRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEEDAINQLVELGYDPLFGARPLKRAIQNYIENPLAQALLA 839          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD++I+F+ L+  E+ +I DI L+ +  +LK K+I++             GY+P YGARPL+R I   +E  +A+  ++ EI E
Sbjct:  756 FKPEFLNRLDDIIMFKPLSINEIGKIIDIFLENIKSKLKEKNIKIDIAEEAKKIIAEEGYDPVYGARPLKRYIENTIETHIAKMFISGEISE 847          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_COXBU3.265e-1441.86Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_XYLFA4.265e-1442.53Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_WOLSU4.265e-1440.22Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_COREF4.265e-1436.96Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_CLOTE4.265e-1441.30Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB_BACC15.570e-1440.22Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BACCR7.274e-1440.22Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_AGRT57.274e-1440.22Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_DICNO9.501e-1442.53Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPB_CLOAB9.501e-1440.22Chaperone protein clpB OS=Clostridium acetobutylic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
back to top