CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F+ LT  E+K I D ++KE+  RL  + I ++            G++P YGARPL+R + R +E  +A +++A  I +
Sbjct:  757 FRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVKLTEAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITD 848          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.241e-13
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE+IVF  L K  + EI  +M  ++  RLK +D+ ++            G +  YGARPLRRAI + +ED ++E++L   I
Sbjct:  697 FRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNI 786          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CAMJE (Chaperone protein clpB OS=Campylobacter jejuni GN=clpB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.241e-13
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD++I F  L K E  EI  ++ K++   L+ K I+              G++P +GARPLRRAI  L+ED +++ +LA E+ E
Sbjct:  748 FKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHE 839          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.241e-13
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F  L K E+++I  + ++ +  RL  + I L+            GY+P +GARPL+RAI R LE  +A+ +L  E  +
Sbjct:  756 FRPEFLNRIDEVIIFHSLDKKELRQIVQLQVERLKARLDDRKISLRLSDVALDFLAEVGYDPVFGARPLKRAIQRELETQIAKAILRGEFND 847          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.621e-13
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE+I+F +L + ++  I +I  K +   L  + I L             GY+P+YGARPL+R + + L+D +AEK+L  EI
Sbjct:  749 FRPEFLNRVDEVILFHRLRRKDMDRIVEIQFKRLESLLVDRKITLSLDHEAIEWLAAKGYDPAYGARPLKRVMQKELQDPLAEKILLGEI 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.621e-13
Identity = 34/90 (37.78%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE +VF  L +  +  IADI L+ ++ RL+ +  ++             G++P YGARPL+RAI + +E+ +A+K+L+ ++
Sbjct:  749 FRPEFINRIDEAVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVTITQQALEILAEAGFDPVYGARPLKRAIQQEIENPLAQKILSGQL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.621e-13
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE +VF  L K  ++EIA I L  +  R+++   +L             GY+P YGARPL+RAI + +E+ +A+++L+ ++
Sbjct:  747 FRPEFINRIDETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDACLDFIGEVGYDPVYGARPLKRAIQQEIENPLAQQILSGKL 836          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEFLNR+DE +VF  L +  +K IA I L  +  RL  +D +L+            G++P YGARPL+RAI + +E+ +A+ +LA
Sbjct:  749 FRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILA 835          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE +VF  L    +K IA I +  +  RL  KD  L+            G++P YGARPL+RA+ + +E+ +A+K+L  ++
Sbjct:  749 FRPEFLNRIDESVVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITDEALSLIAEIGFDPVYGARPLKRALQQEMENPLAQKLLRGDL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F +L K E+  I DI    +   L+ + I L             G++P+YGARPL+R I R ++D +AE +L   +K+
Sbjct:  750 FRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLLEDRKIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSVKD 841          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_BACAN9.501e-1440.22Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPC_BACSU1.241e-1341.11Negative regulator of genetic competence clpC/mecB... [more]
CLPB_CAMJE1.241e-1341.30Chaperone protein clpB OS=Campylobacter jejuni GN=... [more]
CLPB2_ANASP1.241e-1340.22Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_RHILO1.621e-1341.11Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB_PHOLL1.621e-1337.78Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_PASMU1.621e-1338.89Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_VIBCH2.117e-1342.53Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_SHEON2.117e-1340.00Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB_RHOPA2.117e-1340.22Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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