CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9716 contig Csv1_Contig9716:388..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NR+DE++VF  L + ++  IA+I L  +  RL  +++ L+            G++P YGARPL+RAI R +E+ +A+ +LA
Sbjct:  747 FRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELSQEALDKLIAVGFDPVYGARPLKRAIQRWIENPLAQLILA 833          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F +L + E+  I +I    +   L  + I L             G++P+YGARPL+R I R L+D +AE +LA ++K+
Sbjct:  750 FRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGAARDWLAAKGWDPAYGARPLKRVIQRYLQDPLAEMILAGDVKD 841          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    6 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            RPEFLNR+DE I+F  LT+ E+++I  + +K V   L    +EL+            GY+P +GARP++RAI R L + +++K+L++E+
Sbjct:  755 RPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAENGVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLSKKLLSQEV 843          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 33/90 (36.67%), Postives = 60/90 (66.67%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEF+NR+DE++VF  L +  +  IA+I L+ ++ RL+ +  E++            G++P YGARPL+RAI + +E+ +A+++L+ ++
Sbjct:  749 FRPEFINRIDEVVVFHPLGRAHLASIANIQLERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQQEIENPLAQQILSGKL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NR+DE++VF  L +  ++ IA I LK + +RL   ++ LQ            G++P YGARPL+RAI   LE+ +A+ +LA
Sbjct:  752 FRPEFINRIDEVVVFHGLDEKHIQSIARIQLKSLENRLAKLELSLQISDEALALLSEAGFDPVYGARPLKRAIQAELENPLAKAILA 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 275
            FRPEFLNR+DE I+F  L K E++ I  I ++ +  RL+ + + L+            GY+P YGARPL+RA+ + LE ++A+ +L  + K
Sbjct:  756 FRPEFLNRVDETIIFHGLQKSELRSIVQIQIQSLATRLEEQKLTLKLTDKALDFLAAVGYDPVYGARPLKRAVQKYLETAIAKGILRGDYK 846          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD+++VF  L + E++ IA + +  +  RL  + + L+            G +P+YGARPLRR +   + D +A+++LA E+K+
Sbjct:  756 FKPEFLNRLDDLVVFSALNRQELERIAKLQIDRLAQRLAQRRLRLEVTDAALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAKEILAGEVKD 847          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F PEFLNR+D++IVF  L+K ++K+I +IMLKE+ + +K ++I +             G++  YGAR LRRAI + +ED ++ ++L   I++
Sbjct:  706 FNPEFLNRIDDIIVFHTLSKEDLKDIINIMLKELNEAIKERNIVINLSEEAKNYIIDKGFDKKYGARSLRRAIQKEIEDYVSTEILFGNIED 797          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEFLNRLDE I+F  L + E+++I  + +  + +RL  + + L+            GY+P YGARPL+RAI R LE  +A+ +LA
Sbjct:  756 FRPEFLNRLDETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISDTAADWLANAGYDPVYGARPLKRAIQRELETPIAKSILA 842          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+D++IVF  LT  +++ I DI L  +  RL  + I L             GY+P+YGARPLRR I + +E  +A ++L  +I++
Sbjct:  740 FRPEFLNRVDDIIVFDALTAKDLQSIVDIQLGGLRRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTISQYIETPLAREILGGQIQD 831          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_PSEAE2.117e-1340.23Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_BRAJA2.117e-1340.22Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB_BACTN2.117e-1339.33Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB_YERPE2.764e-1336.67Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_CHRVO2.764e-1342.53Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB2_SYNY32.764e-1339.56Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB1_STRAW2.764e-1336.96Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
HLYB_TREHY3.610e-1339.13Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPB_PROMM3.610e-1342.53Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_DEIRA3.610e-1341.30Chaperone protein clpB OS=Deinococcus radiodurans ... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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