CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEF+NRLD++++F  L++ ++  I +I + ++  RL  + + L             GY P+YGARPLRR I + + D +A+K+L+ E+++
Sbjct:  738 FKPEFVNRLDDVVIFDPLSQEQLTHIVEIQIAQLAQRLAARRLTLAVSDSAKLWLAERGYEPAYGARPLRRLIQQAIGDQLAKKLLSGEVRD 829          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE+I+F++L++  + +I  I L+ V   L  + + L             GY+P YGARPL+R I + L D +A+K+LA EI++
Sbjct:  747 FRPEFLNRIDEIILFKRLSRHNMGDIVRIQLQRVEKLLADRRMALALDAEALNWLADKGYDPVYGARPLKRVIQKELVDPIAKKLLAGEIED 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE+I+F +L + ++  I DI ++ +   L  + I LQ            GY+P+YGARPL+R I + ++D +AE++L  +I
Sbjct:  749 FRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDI 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE+I+F +L + ++  I DI ++ +   L  + I LQ            GY+P+YGARPL+R I + ++D +AE++L  +I
Sbjct:  749 FRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDI 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NRLD+++VF  L K ++K IA I L+ +  RL  + ++L             G++P YGARPL+RAI   +E+ +A+++L+
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDPALELLGNVGFDPVYGARPLKRAIQSQVENPLAQQILS 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NRLD+++VF  L K ++K IA I L+ +  RL  + ++L             G++P YGARPL+RAI   +E+ +A+++L+
Sbjct:  752 FRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDAALEVLGSVGFDPVYGARPLKRAIQSQVENPLAQQILS 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++I+F  L + E+ +IA I L+ V   L  + I L+            G++P YGARPL+RAI R LE+ +A K+L
Sbjct:  764 FRPEFLNRIDDVILFHGLGRTELAQIAQIQLRRVEKLLADQKIHLRLTPAALDHLVAVGFDPVYGARPLKRAIQRELENPLAVKLL 849          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE +VF  L++  +K IA I L  + +R++    +L+            G++P YGARPL+RAI + +E+ +A+ +LA  +
Sbjct:  749 FRPEFLNRVDETVVFHPLSQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSV 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NR+DE++VF  L + ++  I +I L  +  RL  +++ L             GY+P YGARPL+RAI R +E+ +A+ +LA
Sbjct:  747 FRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSRLLERELSLSLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILA 833          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_HELHP (Chaperone protein clpB OS=Helicobacter hepaticus GN=clpB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD+++VF  L   ++ +I DIM K +  R   K I +             G++  YGARPL+RA+   +ED +A+ +L  EIKE
Sbjct:  748 FKPEFLNRLDDVVVFNPLGLADITQIVDIMFKSLAKRALEKGINVTLSQEAREHIAQVGFDSVYGARPLKRALYEEVEDRLADLILRDEIKE 839          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_CORDI3.610e-1334.78Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_CAUCR3.610e-1341.30Chaperone protein clpB OS=Caulobacter crescentus G... [more]
CLPB_BRUSU3.610e-1340.00Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRUME3.610e-1340.00Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_XANCP4.715e-1340.23Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_XANAC4.715e-1340.23Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB2_THEEB4.715e-1344.19Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB_VIBVY6.158e-1338.89Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_PSEPK6.158e-1340.23Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_HELHP6.158e-1340.22Chaperone protein clpB OS=Helicobacter hepaticus G... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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