CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++I+F  L + E++ I  + +K +   L  + I L             GY+P+YGARPL+RAI R LE+ +A K+L
Sbjct:  765 FRPEFLNRIDDLIIFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDAALDHIVSAGYDPTYGARPLKRAIQRQLENPIATKIL 850          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.043e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D+ I+F  L++ E+  I  I LK V   L+ + I  +            GY+P YGARPL+RAI R +E+ +A K+L
Sbjct:  759 FRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQKISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKIL 844          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNRLDE+I+F  LT+ ++ +I D+    +   L  + + +             GY+P YGARPL+R I   +++++A+ +L+ E+ E
Sbjct:  744 FRPEFLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLSISLLQEAKELIAQTGYDPEYGARPLKRVIQECIQNNLAKLVLSGEVVE 835          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNRLDE+I+F +L +  + +I  I L+ +   L  ++I L+            GY+PS+GARPL+R I R +++++A+ +LA EI
Sbjct:  748 FKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLKKILLAQNILLEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEI 837          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNRLDE+I+F +L +  + +I  I L+ +   L  ++I L+            GY+PS+GARPL+R I R +++++A+ +LA EI
Sbjct:  748 FKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLKKILLAQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEI 837          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            F+PEFLNRLDE+I+F+ L   E+K+IA + LK++ +RL  KD+  Q             ++ SYGARPL+R I + +E  +A  +L
Sbjct:  753 FKPEFLNRLDEIIIFQNLELNELKDIAKLQLKKLENRLIKKDLNFQITDEAIDHLVKNSFDNSYGARPLKRIIQKEIETKIANNIL 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEF+NRLD++++F  L   E+  I DI L ++  RL  + ++LQ            G++P YGARPLRR + + + D +A+ +LA ++ +
Sbjct:  739 FKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHD 830          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_MYCLE (Chaperone protein clpB OS=Mycobacterium leprae GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEF+NRLD++++F  L   E+  I DI L+++  RL  + ++L+            G++P YGARPLRR + + + D +A+ +LA E+ +
Sbjct:  739 FKPEFINRLDDVLIFDGLNPEELVRIVDIQLEQLGKRLAQRRLQLEVSLPAKRWLAQHGFDPVYGARPLRRLVQQAIGDQLAKMLLAGEVHD 830          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEF+NRLD++++F  L   E+  I DI L ++  RL  + ++LQ            G++P YGARPLRR + + + D +A+ +LA ++ +
Sbjct:  739 FKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHD 830          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNR+DE++++  L   ++K+I DI ++ +  RL  + I L+            GY+P+YGARPL+R I R ++D +A  +L  + +E
Sbjct:  754 FKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDPLALALLEGKFQE 845          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB1_SYNY36.158e-1341.86Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB1_ANASP8.043e-1343.02Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_WOLPM1.050e-1235.87Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_RICFE1.050e-1240.00Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]
CLPB_RICCN1.050e-1240.00Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_PROMP1.050e-1241.86Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_MYCTU1.050e-1235.87Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCLE1.050e-1235.87Chaperone protein clpB OS=Mycobacterium leprae GN=... [more]
CLPB_MYCBO1.050e-1235.87Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]
CLPB_GEOSL1.050e-1236.96Chaperone protein clpB OS=Geobacter sulfurreducens... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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