CB322154

Overview
NameCB322154
Unique NameCB322154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.823e-37
Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 2
Query:  164 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASG 610
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FLFTIKQ    G
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKG 183          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.182e-36
Identity = 82/157 (52.23%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  146 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASG 610
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFTIK L+A G
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKG 227          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.879e-28
Identity = 62/126 (49.21%), Postives = 88/126 (69.84%), Query Frame = 2
Query:  236 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS 607
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVAS 154          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.879e-28
Identity = 62/126 (49.21%), Postives = 88/126 (69.84%), Query Frame = 2
Query:  236 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS 607
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVAS 154          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.500e-27
Identity = 62/124 (50.00%), Postives = 82/124 (66.13%), Query Frame = 2
Query:  245 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVA 604
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFTIK LVA
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVA 155          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  221 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS 607
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT+K LVAS
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVAS 156          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 58/124 (46.77%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  236 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLV 601
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FTIK LV
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLV 155          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  245 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS 607
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT+K    +
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGT 157          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.406e-13
Identity = 42/71 (59.15%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  380 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIK 592
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFTIK
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTIK 55          
BLAST of CB322154 vs. ExPASy Swiss-Prot
Match: PSBO_BRARA (Oxygen-evolving enhancer protein 1, chloroplastic (Fragment) OS=Brassica rapa GN=PSBO PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 2
Query:  200 EGVPKRLTYDEIQSKTYMEVKGTGTANQCPT 292
            EG PKRLTYDEIQSKTYMEVKGTGTANQCPT
Sbjct:    1 EGAPKRLTYDEIQSKTYMEVKGTGTANQCPT 31          
The following BLAST results are available for this feature:
BLAST of CB322154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PSBO_CHLRE1.823e-3752.67Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR1.182e-3652.23Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB5.879e-2849.21Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN5.879e-2849.21Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP6.500e-2750.00Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE71.657e-2243.51Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA51.657e-2246.77Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY35.329e-2142.28Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU1.406e-1359.15Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_BRARA8.528e-1196.77Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionEST0271 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB190 similar to oxygen evolving enhancer protein (acc# BAA96365), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322154 ID=CB322154; Name=CB322154; organism=Citrus sinensis; type=EST; length=611bp
ACCCGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCACAGAGCGTTTCGA
AGGCTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTCTTGCTCTTTGAAT
AATGACTTGAAGGATTTGGCTCAGAAATGTGTTGATGCTACCAAGATCGC
TGGCTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCGGGAGCAAGTGCTG
AAGGTGTTCCAAAGAGGCTAACCTATGATGAAATCCAGAGCAAGACATAC
ATGGAAGTGAAGGGAACCGGAACTGCTAACCAGTGCCCAACCATTGATGG
CGGAGTTGACTCTTTTGCCTTCAAACCTGGCAAATACCAGGCTAAGAAGT
TCTGCCTAGAACCAACTTCCTTCACTGTCAAGGCTGAGGGTGTCAACAAG
AATGCCCCACCAGATTTCCAGAACACCAAGCTCATGACCCGCCTTACCTA
CACCCTTGACGAGATTGAGGGACCTTTTGAAGTGTCCCCCGATGGCACCA
TTAAGTTTGTGGAGAAGGATGGAATTGACTATGCTGCTGTGACAGTTCAG
CTGGCTGGAGGCGAGCGTGTGCCCTTCCTTTTCACCATCAAACAATTGGT
AGCATCAGGCA
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