CB322166

Overview
NameCB322166
Unique NameCB322166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3956 contig Csv1_Contig3956:909..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPF 379
            ++ CPY KFA+ +AN  I EA    + +H+IDF + QG QW  L+ ALA RPGG P  R+TGI   Q  +     L  VG +L++ A +  V FEF+   A +  +++   L ++P   EAV +N  F
Sbjct:  273 YETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNT--DALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVF 398          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.238e-17
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGEAVVV 367
            ++ CPY KFA+ +AN  I EA      +H+IDF + QG QW  L+ ALA RPGG P  R+TGI   Q  +     L  VG +L++ A    + FEF+   A +  ++E + L ++P E  VV
Sbjct:  245 YETCPYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNT--DALQQVGWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVV 364          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPF 379
            ++ CPY KFA+ +AN  I EA + +  +H+IDF ++QG QW  L+ ALA RPGG P+ R+TGI      +     L  VG +L+  A + +V FE++   A T  +++   L ++P   E+V VN  F
Sbjct:  244 YETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNF--DYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVF 369          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPF 379
            ++ CPY KFA+ +AN  I EA E +  +H+IDF + QG QW  L+ ALA R GG P+ R+TGI    + ++    L  VG +L++ A + +V FE++   A +  +++   L ++P   EAV VN  F
Sbjct:  289 YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNS--DHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVF 414          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPF 379
            ++ CPY KFA+ +AN  I EA E +  +H+IDF + QG QW  L+ ALA RP G P  R+TGI      ++    L  VG +L +FA + +V FE++   A +  +++   L ++P   E+VVVN  F
Sbjct:  285 YESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPPAPDNS--DYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVF 410          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.688e-16
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGI-----DDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPF 379
            ++ CPY KFA+ +AN  I EA E +  +H+IDF + QG QW  L+ ALA R GG P  R+TGI     D+S   H        VG +L++ A + +V FE++   A +  +++   L ++P   EAV VN  F
Sbjct:  296 YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHE-------VGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVF 421          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGEA 358
            ++ CPY KFA+ +AN  I EA    H +H++DF I QG QW  LL ALA RPGG P  R+TG+   Q        L  VG +L++FA +  V F+++   A T  ++E   L+ + GEA
Sbjct:  317 YESCPYLKFAHFTANQAILEAFAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDET--DALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPE-GEA 432          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPF 379
            ++ CPY KFA+ +AN  I EA E +  +H+IDF + QG QW  L+ ALA R GG P  R+TGI    + ++    L  VG +L++ A + +V FE++   A +  +++   L ++P   EAV VN  F
Sbjct:  283 YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIGPPAADNS--DHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVF 408          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.988e-16
Identity = 48/121 (39.67%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   14 CPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPL-VRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNF 373
            CPY KFA+++AN  I EA E  + IHI+DF I QG QW  LL ALA R  G P  +R++GI       +    L   G RL +FA   ++ F+F         +     RV P E + VNF
Sbjct:  296 CPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVDPDEVLAVNF 416          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.988e-16
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 2
Query:    8 QICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVN 370
            Q CP     Y +AN  I E       +HIIDF I  G QW  L+ AL+KR  G PL+R+TGI+  QS       ++  G+RL  F    NVPFE+   A     +    L +  GE  VVN
Sbjct:  290 QACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVN 410          
The following BLAST results are available for this feature:
BLAST of CB322166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
GAI_SOLLC5.416e-1739.06DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
GAI_GOSHI9.238e-1739.34DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
GAI_ARATH1.207e-1638.28DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
RGA2_BRACM1.576e-1638.28DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
GAIP_CUCMA1.576e-1639.06DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
RGA_ARATH2.688e-1638.35DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
SLR1_ORYSJ3.511e-1641.18DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
RGA1_BRACM3.511e-1638.28DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
SCL4_ARATH5.988e-1639.67Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL30_ARATH5.988e-1638.84Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionEST0284 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB204 similar to scarecrow 13-like protein (acc# AAL31902), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322166 ID=CB322166; Name=CB322166; organism=Citrus sinensis; type=EST; length=380bp
ACTCTTTCAGATTTGTCCATATTGGAAGTTTGCTTACATGTCAGCAAATG
TCGTCATTGGGGAAGCAGTGGAGAATGAACATATAATTCACATCATTGAT
TTCCAAATTGCTCAGGGCACCCAGTGGATGTTCCTCCTCCATGCTCTTGC
AAAACGGCCTGGTGGATCCCCACTTGTCCGCATAACTGGGATTGATGATT
CCCAATCAACCCATGCTCGTGGTGGAGGACTTGATATTGTAGGGAAGAGA
CTGTCGGAGTTTGCTGCATCCTGCAATGTCCCATTTGAATTCCAAGATAC
TGCCATGACTGCTTGTGAGGTTGAACGACAACATCTAAGGGTTCAACCTG
GGGAAGCTGTGGTGGTGAATTTTCCTTTTG
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