CB322166

Overview
NameCB322166
Unique NameCB322166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3956 contig Csv1_Contig3956:909..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.275e-15
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   11 ICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGEAVVVNF 373
            + P  KF++ +AN  I +A++ E  +HIID  + QG QW  L H LA RP     +RITG   S         L   G+RL++FA+S N+PFEF     +    ++   L  + GEAVVV++
Sbjct:  127 VSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSDL------LASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVVHW 242          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.275e-15
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPF 379
            ++  PY KFA+ +AN  I EA E +  +H+IDF + QG QW  LL ALA RP G P  R+TGI      ++    L  VG +L++   + NV FE++   A +  +++   L ++P   E+VVVN  F
Sbjct:  292 YESSPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNS--DYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVF 417          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVE 325
            ++ CPY KFA+ +AN  I EA      +H++DF I QG QW  LL ALA RPGG P  R+TG+   Q        L  VG +L++FA +  V F+++   A T  ++E
Sbjct:  307 YESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDET--DALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLE 412          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVE 325
            ++ CPY KFA+ +AN  I EA      +H++DF I QG QW  LL ALA RPGG P  R+TG+   Q        L  VG +L++FA +  V F+++   A T  ++E
Sbjct:  311 YESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDET--DALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLE 416          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVE 325
            ++ CPY KFA+ +AN  I EA      +H++DF I QG QW  LL ALA RPGG P  R+TG+   Q        L  VG +L++FA +  V F+++   A T  ++E
Sbjct:  320 YESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDET--DALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLE 425          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.647e-15
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   11 ICPYWKFAYMSANVVIGEAVE--NEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPF 379
            +CP+ K A + AN  I       N   IHIIDF I+ G QW  L+H LA R G S  +RITGI+  Q       G+   G+RL+++    N+PFE+   A     ++ + L+++ GE V VN  F
Sbjct:  401 VCPFKKIAIIFANHSIMRLASSANAKTIHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGFRPAEGVIETGRRLAKYCQKFNIPFEYNAIAQKWESIKLEDLKLKEGEFVAVNSLF 525          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.647e-15
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQ-PGEAVVVNFPF 379
            +  CPY KFA+ +AN  I EAV    ++H+ID  + QG QW  L+ ALA RPGG P  R+TG+ +  +      G+  +G +L++ A +  V F+F   T     ++E      +   E +VVN  F
Sbjct:  232 YDSCPYLKFAHFTANQAILEAVTTSRVVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGNPSNRE----GIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESETLVVNSVF 354          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAM-TACEVERQHLRVQPG-EAVVVNFPF 379
            ++ CPY KFA+ +AN  I E       +H+ID  +  G QW  L+ ALA RP G P  R+TGI  S +       +  VG +L + A++  V FEF+  A+    +++ + L ++PG E+V VN  F
Sbjct:  227 YESCPYLKFAHFTANQAILEVFATAEKVHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIGYSLT------DIQEVGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLESVAVNSVF 347          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.560e-14
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 2
Query:    5 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVN 370
            F++ P  K +Y+  N  I EA+E E ++H+ID   ++  QW+ LL A   RP G P +RITG+      H +   L+ +  RL E A   ++PF+F         +  + LRV+ GEA+ V+
Sbjct:  138 FEMFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALLQAFNSRPEGPPHLRITGV------HHQKEVLEQMAHRLIEEAEKLDIPFQFNPVVSRLDCLNVEQLRVKTGEALAVS 253          
BLAST of CB322166 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 2
Query:    2 LFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVER-QHLRVQPGEAVVVN 370
            L  + PY KF + +AN  I EAV +E  +H+ID+ I +G QW  L+ +LA    G P +RIT +  + +       +   G+RL+ FAAS   PF F    + + E  R   L++  GEA+V N
Sbjct:  212 LQDMSPYVKFGHFTANQAIIEAVAHERRVHVIDYDIMEGVQWASLIQSLASNNNG-PHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFN 334          
The following BLAST results are available for this feature:
BLAST of CB322166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SCL23_ARATH2.275e-1537.70Scarecrow-like protein 23 OS=Arabidopsis thaliana ... [more]
GAIPB_CUCMA2.275e-1538.28DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
SLN1_HORVU3.881e-1540.74DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
RHT1_WHEAT3.881e-1540.74DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
DWRF8_MAIZE3.881e-1540.74DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SCL33_ARATH8.647e-1537.60Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
RGL3_ARATH8.647e-1535.43DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]
RGL1_ARATH4.291e-1436.22DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
SCL3_ARATH9.560e-1434.43Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
NSP2_MEDTR1.249e-1336.29Nodulation-signaling pathway 2 protein OS=Medicago... [more]

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Properties
Property NameValue
Genbank descriptionEST0284 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB204 similar to scarecrow 13-like protein (acc# AAL31902), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322166 ID=CB322166; Name=CB322166; organism=Citrus sinensis; type=EST; length=380bp
ACTCTTTCAGATTTGTCCATATTGGAAGTTTGCTTACATGTCAGCAAATG
TCGTCATTGGGGAAGCAGTGGAGAATGAACATATAATTCACATCATTGAT
TTCCAAATTGCTCAGGGCACCCAGTGGATGTTCCTCCTCCATGCTCTTGC
AAAACGGCCTGGTGGATCCCCACTTGTCCGCATAACTGGGATTGATGATT
CCCAATCAACCCATGCTCGTGGTGGAGGACTTGATATTGTAGGGAAGAGA
CTGTCGGAGTTTGCTGCATCCTGCAATGTCCCATTTGAATTCCAAGATAC
TGCCATGACTGCTTGTGAGGTTGAACGACAACATCTAAGGGTTCAACCTG
GGGAAGCTGTGGTGGTGAATTTTCCTTTTG
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