CB322171

Overview
NameCB322171
Unique NameCB322171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB322171 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.982e-23
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:   22 QFQKKILERSGLGDSTYLXEAVLN-IPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNW 423
            +F  K +  SG+G+ TY            P++++   E E      I+++  +  + P +I IL+VN S+ N TPSLSA +INHYK+R +I  +NL  MGCSA +ISID+  N+ + + N  ALV++ E+++ NW
Sbjct:  111 KFLLKAIVSSGIGEQTYAPRLFFEGREQRPTLQDGLSEMEEFYIDTIEKVLKRNKISPSEIDILVVNVSMLNSTPSLSARIINHYKMREDIKVFNLTAMGCSASVISIDIVKNIFKTYKNKLALVVTSESLSPNW 245
The following BLAST results are available for this feature:
BLAST of CB322171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS3_ARATH2.982e-2337.783-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionEST0289 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB211 similar to beta-ketoacyl-CoA synthase (acc# AAO41904), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322171 ID=CB322171; Name=CB322171; organism=Citrus sinensis; type=EST; length=423bp
ACATTTACAGAGGAAAATCTTCAGTTTCAGAAGAAGATCCTAGAGCGATC
TGGACTTGGTGATTCAACTTACCTTNCAGAGGCTGTGCTCAACATTCCTC
CAAACCCATCAATGAAAGAAGCTAGAAAAGAAGCTGAGGCTGTGATGTTT
GGTGCCATTGATGAGCTTTTTGCAAAAACCTCTGTGAAACCCAAGGACAT
TGGTATCTTGATTGTGAATTGTAGCTTGTTCAATCCAACGCCATCTCTGT
CTGCCATGGTCATCAACCATTACAAGCTTCGAGGGAATATAATTAGCTAC
AATTTGGGAGGGATGGGCTGCAGTGCAGGTTTGATTTCAATTGATCTTGC
AAACAATCTTCTTCAGGTTCATCCCAACTCTTATGCATTGGTTATTAGCA
TGGAGAACATCACATTGAATTGG
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