CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_TRIEI (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.982e-23
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V  ++LA+IGPKFEH+ VFP RTNTEF+++ISP  +KMRVWER                   VL  + ER  TV+LPGG L+IEW   D  +YMTGPAE VF G +
Sbjct:  172 VTAIDLAKIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NOSP7 (Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.895e-23
Identity = 53/106 (50.00%), Postives = 61/106 (57.55%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V  + L  IGPKFEHH  FP R NTEF++++    LKMRVWER                   VL G  +R  TV+LPGGPL IEW E D  VYMTGPAE VF G +
Sbjct:  174 VAAIELESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAGVLTGKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CLOTH (Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.677e-23
Identity = 57/109 (52.29%), Postives = 64/109 (58.72%), Query Frame = -3
Query:   76 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 402
            VD   L +IGPK EHH +FP R N EFVE+I  + LKMRVWER                   VL G +ER+ TV L GG L IEW E +NHVYMTGPA  VF G V LN
Sbjct:  170 VDIFPLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAVLVASVLNGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDLN 278          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJB (Diaminopimelate epimerase OS=Synechococcus sp. GN=dapF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.525e-22
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = -3
Query:   88 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 402
            +++L+LA +GP FEHH  FP RTNTEFV+++SP++L++RVWER                   VLE  AE + TV+LPGG L+I W     HV+MTGPA  VF G+
Sbjct:  178 LEELDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVLVAAVLEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSGT 282          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_HELMI (Diaminopimelate epimerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dapF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.297e-22
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            +D+  +  +GPK E H  FPA+TN EFV++++P +++MRVWER                   VL G+ +R+ TV L GGPL IEW+EE+N VYMTGPA  VF G + L
Sbjct:  174 IDEAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGTGACATVVGSVLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP8 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 8801) GN=dapF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.297e-22
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = -3
Query:   91 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 393
            ++L  +GP+FEHH  FP RTNTEF+E++    +KMRVWER                   VL    +R C V+LPGG L IEW E DN +YMTGPAE+VF G
Sbjct:  177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGVLTNQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTG 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METM7 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=dapF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.253e-21
Identity = 51/106 (48.11%), Postives = 61/106 (57.55%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V +  L +IGP FE H  FP +TN EFVE+I  S +KMRVWER                   VL+G+  R+ TV L GG L IEW E DNH+YMTGPA  VF G +
Sbjct:  170 VSEFPLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACAVLVASVLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEI 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_DESDA (Diaminopimelate epimerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=dapF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.253e-21
Identity = 51/104 (49.04%), Postives = 62/104 (59.62%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            +D L+L  IGP+FEHH +FP RTNTEF E+IS ++++MRVWER                   VL G+A R   V+L GG L I W E  NHVYMTG A  VF G
Sbjct:  180 IDDLDLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTGACAVAVACVLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSG 283          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METM6 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=dapF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.636e-21
Identity = 51/106 (48.11%), Postives = 62/106 (58.49%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V++  L +IGP FE H  FP +TN EFVE+I  S +KMRVWER                   VL+G+  R+ TV L GG L IEW E DNH+YMTGPA  VF G +
Sbjct:  170 VEEFPLEKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLVASVLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEI 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METM5 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=dapF PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.137e-21
Identity = 51/106 (48.11%), Postives = 63/106 (59.43%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V++  L +IGP FE H  FP +TN EFVE+I  S +KMRVWER                   VL+G+  R+ TV L GG L IEW E+DNH+YMTGPA  VF G +
Sbjct:  170 VEEFPLEKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLTASVLKGYVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEI 275          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_TRIEI2.982e-2350.94Diaminopimelate epimerase OS=Trichodesmium erythra... [more]
DAPF_NOSP73.895e-2350.00Diaminopimelate epimerase OS=Nostoc punctiforme (s... [more]
DAPF_CLOTH8.677e-2352.29Diaminopimelate epimerase OS=Clostridium thermocel... [more]
DAPF_SYNJB2.525e-2247.62Diaminopimelate epimerase OS=Synechococcus sp. GN=... [more]
DAPF_HELMI3.297e-2245.37Diaminopimelate epimerase OS=Heliobacterium modest... [more]
DAPF_CYAP83.297e-2248.51Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_METM71.253e-2148.11Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_DESDA1.253e-2149.04Diaminopimelate epimerase OS=Desulfovibrio desulfu... [more]
DAPF_METM61.636e-2148.11Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_METM52.137e-2148.11Diaminopimelate epimerase OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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