CB322179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.369e-12 Identity = 38/105 (36.19%), Postives = 49/105 (46.67%), Query Frame = -3 Query: 85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399 D+ + IGP E HS+FP R N EFV I L R WER L G + + +DL GG L I+W+E N + MTGPA +F G + Sbjct: 176 DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGNLTGRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CELJU (Diaminopimelate epimerase OS=Cellvibrio japonicus (strain Ueda107) GN=dapF PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.369e-12 Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = -3 Query: 79 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 387 + ++GP E+H FPAR N F++++S ++ +RV+ER L G V+LPGG L I W E + V MTGPA VF+G + L Sbjct: 174 VGQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLRGLLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12 Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V N+AEIG H FP N F+++++ +K+RV+ER ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L Sbjct: 168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12 Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V N+AEIG H FP N F+++++ +K+RV+ER ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L Sbjct: 168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12 Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V N+AEIG H FP N F+++++ +K+RV+ER ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L Sbjct: 168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12 Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V N+AEIG H FP N F+++++ +K+RV+ER ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L Sbjct: 168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PHEZH (Diaminopimelate epimerase OS=Phenylobacterium zucineum (strain HLK1) GN=dapF PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12 Identity = 36/100 (36.00%), Postives = 49/100 (49.00%), Query Frame = -3 Query: 85 AEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 384 AE GP E H +FP N F ++ +P ++++RVWER G R T++L GG L +EW+ D HV MTGPA V F G + Sbjct: 178 AEAGPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASRRGLIGRHATMELDGGELFVEWR-ADGHVIMTGPAAVDFQGEL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACWK (Diaminopimelate epimerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dapF PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12 Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V+ L +GP E H +FP R N EF+EI++ ++ RVWER +L G E + TV L GG L I W EE N V M GPAE++ G Sbjct: 176 VENAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEIICRG 280
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ACTSZ (Diaminopimelate epimerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dapF PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12 Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = -3 Query: 79 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 390 N+A++GP E H FP R N F+++I +K+RV+ER +++G + VDLPGG L IEW E + +YMTG A ++ G + L Sbjct: 171 NVAQLGPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGLLDSPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOPA (Diaminopimelate epimerase OS=Rhodopseudomonas palustris GN=dapF PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12 Identity = 36/104 (34.62%), Postives = 45/104 (43.27%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V+ +L GP E+H +FP R N I+ + MR WER +R + LPGG L IEW+E DNHV MTG A F G Sbjct: 174 VNAYDLGRFGPLLENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTVEMTLPGGQLTIEWRESDNHVLMTGGAAFEFEG 277 The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bpback to top |