CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.369e-12
Identity = 38/105 (36.19%), Postives = 49/105 (46.67%), Query Frame = -3
Query:   85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399
            D+  +  IGP  E HS+FP R N EFV I     L  R WER                    L G + +   +DL GG L I+W+E  N + MTGPA  +F G +
Sbjct:  176 DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGNLTGRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CELJU (Diaminopimelate epimerase OS=Cellvibrio japonicus (strain Ueda107) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.369e-12
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = -3
Query:   79 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 387
            + ++GP  E+H  FPAR N  F++++S  ++ +RV+ER                    L G       V+LPGG L I W  E + V MTGPA  VF+G + L
Sbjct:  174 VGQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLRGLLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V   N+AEIG     H  FP   N  F+++++   +K+RV+ER                    ++G  +++  VDLPGG L I W+ E   ++MTGPA+ V+ G + L
Sbjct:  168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V   N+AEIG     H  FP   N  F+++++   +K+RV+ER                    ++G  +++  VDLPGG L I W+ E   ++MTGPA+ V+ G + L
Sbjct:  168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V   N+AEIG     H  FP   N  F+++++   +K+RV+ER                    ++G  +++  VDLPGG L I W+ E   ++MTGPA+ V+ G + L
Sbjct:  168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V   N+AEIG     H  FP   N  F+++++   +K+RV+ER                    ++G  +++  VDLPGG L I W+ E   ++MTGPA+ V+ G + L
Sbjct:  168 VANANVAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PHEZH (Diaminopimelate epimerase OS=Phenylobacterium zucineum (strain HLK1) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12
Identity = 36/100 (36.00%), Postives = 49/100 (49.00%), Query Frame = -3
Query:   85 AEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 384
            AE GP  E H +FP   N  F ++ +P ++++RVWER                      G   R  T++L GG L +EW+  D HV MTGPA V F G +
Sbjct:  178 AEAGPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASRRGLIGRHATMELDGGELFVEWR-ADGHVIMTGPAAVDFQGEL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACWK (Diaminopimelate epimerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V+   L  +GP  E H +FP R N EF+EI++  ++  RVWER                   +L G  E  +  TV L GG L I W EE N V M GPAE++  G
Sbjct:  176 VENAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEIICRG 280          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ACTSZ (Diaminopimelate epimerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = -3
Query:   79 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 390
            N+A++GP  E H  FP R N  F+++I    +K+RV+ER                   +++G  +    VDLPGG L IEW  E + +YMTG A  ++ G + L
Sbjct:  171 NVAQLGPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGLLDSPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOPA (Diaminopimelate epimerase OS=Rhodopseudomonas palustris GN=dapF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 36/104 (34.62%), Postives = 45/104 (43.27%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V+  +L   GP  E+H +FP R N     I+    + MR WER                         +R   + LPGG L IEW+E DNHV MTG A   F G
Sbjct:  174 VNAYDLGRFGPLLENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTVEMTLPGGQLTIEWRESDNHVLMTGGAAFEFEG 277          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_LEPIC2.369e-1236.19Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_CELJU2.369e-1234.95Diaminopimelate epimerase OS=Cellvibrio japonicus ... [more]
DAPF_SHESR3.093e-1232.41Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHESM3.093e-1232.41Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHESA3.093e-1232.41Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEON3.093e-1232.41Diaminopimelate epimerase OS=Shewanella oneidensis... [more]
DAPF_PHEZH4.040e-1236.00Diaminopimelate epimerase OS=Phenylobacterium zuci... [more]
DAPF_BACWK4.040e-1237.74Diaminopimelate epimerase OS=Bacillus weihenstepha... [more]
DAPF_ACTSZ4.040e-1234.62Diaminopimelate epimerase OS=Actinobacillus succin... [more]
DAPF_RHOPA5.277e-1234.62Diaminopimelate epimerase OS=Rhodopseudomonas palu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
back to top