CB322179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHILW (Diaminopimelate epimerase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dapF PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12 Identity = 36/106 (33.96%), Postives = 51/106 (48.11%), Query Frame = -3 Query: 85 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDL----PGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 390 +LA GP E+H +FP R N ++ SP+ + R WER G R+ T+++ P L IEW+E D+HV MTGPAE + GS+ Sbjct: 178 DLARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSL 283
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12 Identity = 37/108 (34.26%), Postives = 53/108 (49.07%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 +D + + EIG H F N F++II+P +K+RV+ER L+ R+ VDLPGG L I+W E ++MTGPAE V+ G + L Sbjct: 168 IDTVAVDEIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQDKLSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOP5 (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain BisA53) GN=dapF PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12 Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = -3 Query: 85 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 390 +L GP E+H +FP R N I+ + + +R WER V AER+ + LPGG L I+W+E D+HV MTG A F G++ Sbjct: 178 DLGRFGPLLENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQVQISLPGGDLTIDWREADDHVLMTGGASFEFEGTL 279
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PROMH (Diaminopimelate epimerase OS=Proteus mirabilis (strain HI4320) GN=dapF PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12 Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = -3 Query: 79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 ++V+ + AE+ G E H FP R N F++++ + L +RV+ER + +G +R+ V+LPGG L IEWK N +YMTGPA ++ G++ L Sbjct: 162 IQVEDIKTAEVESLGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLLDRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_OLICO (Diaminopimelate epimerase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=dapF PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12 Identity = 32/104 (30.77%), Postives = 49/104 (47.12%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 ++ +L +GP E+H +FP R N ++ + ++MR WER +R + LPGG L IEW+E D+HV MTG A + + G Sbjct: 176 IEAYDLERLGPLLENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTVEMSLPGGDLTIEWRESDDHVLMTGAAVLEYEG 279
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_HAEIE (Diaminopimelate epimerase OS=Haemophilus influenzae (strain PittEE) GN=dapF PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12 Identity = 35/108 (32.41%), Postives = 54/108 (50.00%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 + N+ ++GP E+H FP R N F++II+ +K+RV+ER +++G VDLPGG L IEW + +YMTG A ++ G + L Sbjct: 167 IQTANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOP2 (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain HaA2) GN=dapF PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12 Identity = 35/100 (35.00%), Postives = 46/100 (46.00%), Query Frame = -3 Query: 91 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 390 +L + GP E+H +FP R N I+ + MR WER +R + LPGG L IEW+E D+HV MTG AE+ F G Sbjct: 178 DLGQFGPLLENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIVEMTLPGGKLTIEWREGDDHVLMTGGAELEFEG 277
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BRASO (Diaminopimelate epimerase OS=Bradyrhizobium sp. (strain ORS278) GN=dapF PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12 Identity = 36/104 (34.62%), Postives = 46/104 (44.23%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V+ +L GP E+H +FP R N +I+ + MR WER A R + LPGG L IEW+E D+HV MTG A F G Sbjct: 175 VNSYDLERFGPLLENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLVHMTLPGGELTIEWRERDDHVLMTGTATFEFEG 278
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ALISL (Diaminopimelate epimerase OS=Aliivibrio salmonicida (strain LFI1238) GN=dapF PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12 Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = -3 Query: 85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402 VD ++ + GP E H FP R N F+EI+SPS++K+RV+ER +++ E V LPGG L I W+ ++MTGPA V+ G + Sbjct: 169 VDNYDVDKYGPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELLEEDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_TERTT (Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dapF PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.176e-11 Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = -3 Query: 79 IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 378 +G + E H+ FP R N F+E+IS ++K+RV+ER ++ G + V LPGG L I W+ + V MTGPA+ VF+G V L Sbjct: 177 LGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGIVRGLLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276 The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bpback to top |