CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHILW (Diaminopimelate epimerase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 36/106 (33.96%), Postives = 51/106 (48.11%), Query Frame = -3
Query:   85 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDL----PGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 390
            +LA  GP  E+H +FP R N    ++ SP+ +  R WER                      G   R+ T+++    P   L IEW+E D+HV MTGPAE  + GS+
Sbjct:  178 DLARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSL 283          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 37/108 (34.26%), Postives = 53/108 (49.07%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            +D + + EIG     H  F    N  F++II+P  +K+RV+ER                    L+    R+  VDLPGG L I+W  E   ++MTGPAE V+ G + L
Sbjct:  168 IDTVAVDEIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQDKLSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOP5 (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain BisA53) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = -3
Query:   85 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 390
            +L   GP  E+H +FP R N     I+  + + +R WER                   V    AER+  + LPGG L I+W+E D+HV MTG A   F G++
Sbjct:  178 DLGRFGPLLENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQVQISLPGGDLTIDWREADDHVLMTGGASFEFEGTL 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PROMH (Diaminopimelate epimerase OS=Proteus mirabilis (strain HI4320) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = -3
Query:   79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            ++V+ +  AE+   G   E H  FP R N  F++++  + L +RV+ER                   + +G  +R+  V+LPGG L IEWK   N +YMTGPA  ++ G++ L
Sbjct:  162 IQVEDIKTAEVESLGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLLDRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_OLICO (Diaminopimelate epimerase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 32/104 (30.77%), Postives = 49/104 (47.12%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            ++  +L  +GP  E+H +FP R N     ++  + ++MR WER                         +R   + LPGG L IEW+E D+HV MTG A + + G
Sbjct:  176 IEAYDLERLGPLLENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTVEMSLPGGDLTIEWRESDDHVLMTGAAVLEYEG 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_HAEIE (Diaminopimelate epimerase OS=Haemophilus influenzae (strain PittEE) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 35/108 (32.41%), Postives = 54/108 (50.00%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            +   N+ ++GP  E+H  FP R N  F++II+   +K+RV+ER                   +++G       VDLPGG L IEW    + +YMTG A  ++ G + L
Sbjct:  167 IQTANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOP2 (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain HaA2) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 35/100 (35.00%), Postives = 46/100 (46.00%), Query Frame = -3
Query:   91 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 390
            +L + GP  E+H +FP R N     I+    + MR WER                         +R   + LPGG L IEW+E D+HV MTG AE+ F G
Sbjct:  178 DLGQFGPLLENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIVEMTLPGGKLTIEWREGDDHVLMTGGAELEFEG 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BRASO (Diaminopimelate epimerase OS=Bradyrhizobium sp. (strain ORS278) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 36/104 (34.62%), Postives = 46/104 (44.23%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V+  +L   GP  E+H +FP R N    +I+    + MR WER                        A R   + LPGG L IEW+E D+HV MTG A   F G
Sbjct:  175 VNSYDLERFGPLLENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLVHMTLPGGELTIEWRERDDHVLMTGTATFEFEG 278          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ALISL (Diaminopimelate epimerase OS=Aliivibrio salmonicida (strain LFI1238) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            VD  ++ + GP  E H  FP R N  F+EI+SPS++K+RV+ER                   +++   E    V LPGG L I W+     ++MTGPA  V+ G +
Sbjct:  169 VDNYDVDKYGPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELLEEDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_TERTT (Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.176e-11
Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = -3
Query:   79 IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 378
            +G + E H+ FP R N  F+E+IS  ++K+RV+ER                   ++ G  +    V LPGG L I W+  +  V MTGPA+ VF+G V L
Sbjct:  177 LGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGIVRGLLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_RHILW5.277e-1233.96Diaminopimelate epimerase OS=Rhizobium leguminosar... [more]
DAPF_SHEDO6.891e-1234.26Diaminopimelate epimerase OS=Shewanella denitrific... [more]
DAPF_RHOP56.891e-1234.31Diaminopimelate epimerase OS=Rhodopseudomonas palu... [more]
DAPF_PROMH6.891e-1232.74Diaminopimelate epimerase OS=Proteus mirabilis (st... [more]
DAPF_OLICO6.891e-1230.77Diaminopimelate epimerase OS=Oligotropha carboxido... [more]
DAPF_HAEIE6.891e-1232.41Diaminopimelate epimerase OS=Haemophilus influenza... [more]
DAPF_RHOP29.001e-1235.00Diaminopimelate epimerase OS=Rhodopseudomonas palu... [more]
DAPF_BRASO9.001e-1234.62Diaminopimelate epimerase OS=Bradyrhizobium sp. (s... [more]
DAPF_ALISL9.001e-1234.91Diaminopimelate epimerase OS=Aliivibrio salmonicid... [more]
DAPF_TERTT1.176e-1136.00Diaminopimelate epimerase OS=Teredinibacter turner... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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