CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBL (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = -3
Query:   85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399
            D+  +  IGP  E H +FP R N EFV +        R WER                    L G + +   +DL GG L I+W+E  N V MTGPA+ +F G +
Sbjct:  176 DQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAVTVAGNLTGKSGKEVKIDLRGGTLRIQWQESGN-VLMTGPAKEIFSGEI 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBJ (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = -3
Query:   85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399
            D+  +  IGP  E H +FP R N EFV +        R WER                    L G + +   +DL GG L I+W+E  N V MTGPA+ +F G +
Sbjct:  176 DQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAVTVAGNLTGKSGKEVKIDLRGGTLRIQWQESGN-VLMTGPAKEIFSGEI 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BRASB (Diaminopimelate epimerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 36/104 (34.62%), Postives = 45/104 (43.27%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V+  +L   GP  E+H +FP R N     I+    + MR WER                        A R   + LPGG L IEW+E D+HV MTG A   F G
Sbjct:  175 VNSYDLERFGPLLENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRANRIVQMTLPGGELTIEWRERDDHVLMTGTATFEFEG 278          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ACTPJ (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+V+ +NL    E+GP  E+H  FP R N  F+++++ + +K+RV+ER                   +++G  +    VDL GG L IEW+   + +YMTG A  ++ G + L
Sbjct:  162 LQVEDINLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVLDNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHELP (Diaminopimelate epimerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 35/106 (33.02%), Postives = 51/106 (48.11%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V   ++  IG     H  FP   N  F++++  + +K+RV+ER                    L+G   RR  VDLPGG L I W+ E   ++MTGPAE V+ G +
Sbjct:  172 VANADVERIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGKLARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQI 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOPS (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain BisB5) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 35/104 (33.65%), Postives = 45/104 (43.27%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            ++  +L   GP  E+H +FP R N     I+    + MR WER                        A+R   + LPGG L I W+E DNHV MTG A   F G
Sbjct:  174 IEAHDLGRFGPLLENHPIFPERANITLAHIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRADRVVEMTLPGGQLSIAWRESDNHVLMTGGATFEFEG 277          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PROMT (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL2A) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 36/106 (33.96%), Postives = 48/106 (45.28%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            ++ +   E G   E H+ FP  TN  FVEII  S +K++VWER                      G       V LPGG L++EW  +   V+M GPA  VF G +
Sbjct:  177 IEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEI 282          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PROM1 (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL1A) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 36/106 (33.96%), Postives = 48/106 (45.28%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            ++ +   E G   E H+ FP  TN  FVEII  S +K++VWER                      G       V LPGG L++EW  +   V+M GPA  VF G +
Sbjct:  177 IEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEI 282          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIN (Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 37/105 (35.24%), Postives = 48/105 (45.71%), Query Frame = -3
Query:   85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399
            D+  +  IGP  E HS+FP R N EFV I     L  R WER                    L   + +   +DL GG L I+W+E  N + MTGPA  +F G +
Sbjct:  176 DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGNLTRRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_AGRT5 (Diaminopimelate epimerase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 38/106 (35.85%), Postives = 51/106 (48.11%), Query Frame = -3
Query:   85 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGG----PLDIEWKEEDNHVYMTGPAEVVFYGSV 390
            +L   GP  E+H +FP + N    ++IS S L+ R WER                      G   R+ T+D+       PL I+W+ EDNHV MTGPAE  + GSV
Sbjct:  178 DLERFGPLLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRTGRKVTIDVASSPVRVPLTIDWR-EDNHVVMTGPAEWEWSGSV 282          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_LEPBL1.535e-1134.29Diaminopimelate epimerase OS=Leptospira borgpeters... [more]
DAPF_LEPBJ1.535e-1134.29Diaminopimelate epimerase OS=Leptospira borgpeters... [more]
DAPF_BRASB1.535e-1134.62Diaminopimelate epimerase OS=Bradyrhizobium sp. (s... [more]
DAPF_ACTPJ1.535e-1131.86Diaminopimelate epimerase OS=Actinobacillus pleuro... [more]
DAPF_SHELP2.005e-1133.02Diaminopimelate epimerase OS=Shewanella loihica (s... [more]
DAPF_RHOPS2.005e-1133.65Diaminopimelate epimerase OS=Rhodopseudomonas palu... [more]
DAPF_PROMT2.005e-1133.96Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_PROM12.005e-1133.96Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_LEPIN2.005e-1135.24Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_AGRT52.005e-1135.85Diaminopimelate epimerase OS=Agrobacterium tumefac... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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