CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOPB (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain BisB18) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 35/104 (33.65%), Postives = 46/104 (44.23%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V+  +LA  GP  E+H +FP R N    +I+    + +R WER                          R   + LPGG L IEW+  D+HV MTGPA   F G
Sbjct:  173 VNAHDLARFGPLLENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVHITLPGGELGIEWRASDDHVLMTGPAAFEFEG 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PASMU (Diaminopimelate epimerase OS=Pasteurella multocida GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            +   N+ ++GP  E+H  FP R N  F+++I    +K+RV+ER                   V++G  + +  VDLPGG L IEW+     ++MTG A  V+ G + L
Sbjct:  167 IQTANVEQLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGLLDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METNO (Diaminopimelate epimerase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 37/102 (36.27%), Postives = 49/102 (48.04%), Query Frame = -3
Query:   85 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 390
            +LA IGP  E H +FP R N    ++  P  + +RVWER                          RR  V LPGG L I+W E+D HV MTGP E+ + G++
Sbjct:  184 DLARIGPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLTGRRAVVTLPGGDLVIDWGEDD-HVRMTGPTELEWEGTL 284          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BARQU (Diaminopimelate epimerase OS=Bartonella quintana GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 35/104 (33.65%), Postives = 49/104 (47.12%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            + ++ L + GPK EH  +FP R N     + S   L +R WER                      G  +R   V+LPGG L+I ++ EDNH+ MTGP +  F G
Sbjct:  167 IQQIPLEKYGPKLEHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHIDVNLPGGTLNIVYR-EDNHIVMTGPTKYEFGG 269          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHIF8 (Diaminopimelate epimerase OS=Shigella flexneri serotype 5b (strain 8401) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +  +GP  E H  FP R N  F++++    +++RV+ER                   + +G  +    V+LPGG LDI WK   + +YMTGPA  V+ G + L
Sbjct:  167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NITHX (Diaminopimelate epimerase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = -3
Query:   88 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 402
            V+  +L   GP  E+H +FP R N     I    ++ MR WER                        A+R   + LPGG L IEW+E D+HV MTGPA   + G+
Sbjct:  176 VNAHDLERFGPLLENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVVDMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGT 280          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METS4 (Diaminopimelate epimerase OS=Methylobacterium sp. (strain 4-46) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 36/100 (36.00%), Postives = 49/100 (49.00%), Query Frame = -3
Query:   91 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 390
            +L  IGP  E H +FP R N    ++++  ++++RVWER                          RR TV LPGG L I W E+D HV MTGP E+ + G
Sbjct:  184 DLGRIGPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLTGRRATVTLPGGDLVIAWGEDD-HVRMTGPTELEWEG 282          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_VIBPA (Diaminopimelate epimerase OS=Vibrio parahaemolyticus GN=dapF PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 34/106 (32.08%), Postives = 52/106 (49.06%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            VD  ++  +GP  E H  FP R N  F++++S   +++RV+ER                   +L+G  +    V LPGG L I W+     ++MTGPA  VF G +
Sbjct:  169 VDTADVDTLGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLDESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 34/108 (31.48%), Postives = 53/108 (49.07%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V   ++AEIG     H  FP   N  F++++    +K+RV+ER                    ++G   ++  VDLPGG L I W+ E   ++MTGPA+ V+ G + L
Sbjct:  168 VASASVAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGKLGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 34/108 (31.48%), Postives = 53/108 (49.07%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V   ++AEIG     H  FP   N  F++++    +K+RV+ER                    ++G   ++  VDLPGG L I W+ E   ++MTGPA+ V+ G + L
Sbjct:  168 VASASVAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGKLGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_RHOPB2.619e-1133.65Diaminopimelate epimerase OS=Rhodopseudomonas palu... [more]
DAPF_PASMU2.619e-1132.41Diaminopimelate epimerase OS=Pasteurella multocida... [more]
DAPF_METNO2.619e-1136.27Diaminopimelate epimerase OS=Methylobacterium nodu... [more]
DAPF_BARQU2.619e-1133.65Diaminopimelate epimerase OS=Bartonella quintana G... [more]
DAPF_SHIF83.420e-1132.41Diaminopimelate epimerase OS=Shigella flexneri ser... [more]
DAPF_NITHX3.420e-1134.29Diaminopimelate epimerase OS=Nitrobacter hamburgen... [more]
DAPF_METS43.420e-1136.00Diaminopimelate epimerase OS=Methylobacterium sp. ... [more]
DAPF_VIBPA4.467e-1132.08Diaminopimelate epimerase OS=Vibrio parahaemolytic... [more]
DAPF_SHEB94.467e-1131.48Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB84.467e-1131.48Diaminopimelate epimerase OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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