CB322179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOPB (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain BisB18) GN=dapF PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11 Identity = 35/104 (33.65%), Postives = 46/104 (44.23%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V+ +LA GP E+H +FP R N +I+ + +R WER R + LPGG L IEW+ D+HV MTGPA F G Sbjct: 173 VNAHDLARFGPLLENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVHITLPGGELGIEWRASDDHVLMTGPAAFEFEG 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PASMU (Diaminopimelate epimerase OS=Pasteurella multocida GN=dapF PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11 Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 + N+ ++GP E+H FP R N F+++I +K+RV+ER V++G + + VDLPGG L IEW+ ++MTG A V+ G + L Sbjct: 167 IQTANVEQLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGLLDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METNO (Diaminopimelate epimerase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dapF PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11 Identity = 37/102 (36.27%), Postives = 49/102 (48.04%), Query Frame = -3 Query: 85 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 390 +LA IGP E H +FP R N ++ P + +RVWER RR V LPGG L I+W E+D HV MTGP E+ + G++ Sbjct: 184 DLARIGPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLTGRRAVVTLPGGDLVIDWGEDD-HVRMTGPTELEWEGTL 284
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BARQU (Diaminopimelate epimerase OS=Bartonella quintana GN=dapF PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11 Identity = 35/104 (33.65%), Postives = 49/104 (47.12%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 + ++ L + GPK EH +FP R N + S L +R WER G +R V+LPGG L+I ++ EDNH+ MTGP + F G Sbjct: 167 IQQIPLEKYGPKLEHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHIDVNLPGGTLNIVYR-EDNHIVMTGPTKYEFGG 269
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHIF8 (Diaminopimelate epimerase OS=Shigella flexneri serotype 5b (strain 8401) GN=dapF PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11 Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 VD + +GP E H FP R N F++++ +++RV+ER + +G + V+LPGG LDI WK + +YMTGPA V+ G + L Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NITHX (Diaminopimelate epimerase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dapF PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11 Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = -3 Query: 88 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 402 V+ +L GP E+H +FP R N I ++ MR WER A+R + LPGG L IEW+E D+HV MTGPA + G+ Sbjct: 176 VNAHDLERFGPLLENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVVDMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGT 280
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_METS4 (Diaminopimelate epimerase OS=Methylobacterium sp. (strain 4-46) GN=dapF PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11 Identity = 36/100 (36.00%), Postives = 49/100 (49.00%), Query Frame = -3 Query: 91 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 390 +L IGP E H +FP R N ++++ ++++RVWER RR TV LPGG L I W E+D HV MTGP E+ + G Sbjct: 184 DLGRIGPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLTGRRATVTLPGGDLVIAWGEDD-HVRMTGPTELEWEG 282
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_VIBPA (Diaminopimelate epimerase OS=Vibrio parahaemolyticus GN=dapF PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11 Identity = 34/106 (32.08%), Postives = 52/106 (49.06%), Query Frame = -3 Query: 85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402 VD ++ +GP E H FP R N F++++S +++RV+ER +L+G + V LPGG L I W+ ++MTGPA VF G + Sbjct: 169 VDTADVDTLGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLDESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11 Identity = 34/108 (31.48%), Postives = 53/108 (49.07%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V ++AEIG H FP N F++++ +K+RV+ER ++G ++ VDLPGG L I W+ E ++MTGPA+ V+ G + L Sbjct: 168 VASASVAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGKLGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11 Identity = 34/108 (31.48%), Postives = 53/108 (49.07%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V ++AEIG H FP N F++++ +K+RV+ER ++G ++ VDLPGG L I W+ E ++MTGPA+ V+ G + L Sbjct: 168 VASASVAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGKLGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bpback to top |