CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHIME (Diaminopimelate epimerase OS=Rhizobium meliloti GN=dapF PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.289e-15
Identity = 40/101 (39.60%), Postives = 51/101 (50.50%), Query Frame = -3
Query:   85 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 387
            L   GP  E+H +FP R N     I S  ++ +R WER                      G  ER  TV++PGGPL IEW+E D+HV MTGPAE  + G+V
Sbjct:  179 LDRFGPLLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERMVTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTV 279          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_MANSM (Diaminopimelate epimerase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.989e-15
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V+  N+ E+GP  E+H  FP R N  F+++I+P+ +K+RV+ER                   +++G  E +  VDLPGG L IEW+ E + +YMTG A  V+ G + L
Sbjct:  167 VETANVTELGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGLLENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ELUMP (Diaminopimelate epimerase OS=Elusimicrobium minutum (strain Pei191) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.904e-15
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            + K ++A+ G + E+++ FP +TN EFV++I+PS+L M+VWER                   VL    ER   V+L GG L +EW ++   V+MTGPA  VF G
Sbjct:  167 IKKTDVAKTGKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAGVLNNKTERLALVELDGGQLTVEWPDDGASVFMTGPATEVFSG 270          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_HALOH (Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.659e-15
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V+++ ++  G + EH+ +FP +TN EF++I S  ++ MRVWER                   +  G  +   TV LPGG L+IEW+E+D  V+MTGPAE V+ G +++
Sbjct:  176 VNQIPVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVAGIKNGLLKNMVTVHLPGGDLNIEWQEQD--VFMTGPAESVYTGKIVI 281          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_DESAH (Diaminopimelate epimerase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.659e-15
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            V K++L  +G   E H +FPA+TN EFV +++  +L MRVWER                    L G       V L GG L I W ++ NH++ TGPA  VF G +
Sbjct:  176 VKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASAVLVAASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRI 281          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU2 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15
Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +N A   E+GPK EHH  FPAR N  F+ ++   + ++RVWER                   + +G  +    +DLPGG L IEW    + V MTGPA  V+ G V L
Sbjct:  164 LRVDDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15
Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +  A   E+GPK EHH  FP R N  F++++   +  +RVWER                   + +G  +   T+DLPGG L IEW      V MTGPA  VF G V L
Sbjct:  164 LRVDDVRTAPVHELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQGWMDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSE14 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15
Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +N A   E+GPK EHH  FPAR N  F+ ++   + ++RVWER                   + +G  +    +DLPGG L IEW    + V MTGPA  V+ G V L
Sbjct:  164 LRVDDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_GLUOX (Diaminopimelate epimerase OS=Gluconobacter oxydans GN=dapF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15
Identity = 41/104 (39.42%), Postives = 53/104 (50.96%), Query Frame = -3
Query:   88 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 399
            D      +GP  E   +FP R N  F +I+SP  +++RVWER                   V  G  ER CTV + GG L I W+ ED HV+MTGPA  VF+G+
Sbjct:  153 DAFRAEALGPGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLTERTCTVTMDGGDLRITWR-EDGHVFMTGPAVTVFHGT 255          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_AERHH (Diaminopimelate epimerase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.938e-14
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = -3
Query:   79 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 387
            +A +GP  E H  FP R N  F+E+++ S++K+RV+ER                   + +G  + R TV LPGG L I WK     VYMTGPAE VF G + L
Sbjct:  174 VATLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQGKLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_RHIME2.289e-1539.60Diaminopimelate epimerase OS=Rhizobium meliloti GN... [more]
DAPF_MANSM2.989e-1537.04Diaminopimelate epimerase OS=Mannheimia succinicip... [more]
DAPF_ELUMP3.904e-1538.46Diaminopimelate epimerase OS=Elusimicrobium minutu... [more]
DAPF_HALOH6.659e-1537.04Diaminopimelate epimerase OS=Halothermothrix oreni... [more]
DAPF_DESAH6.659e-1536.79Diaminopimelate epimerase OS=Desulfobacterium auto... [more]
DAPF_PSEU28.698e-1538.05Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_PSEE48.698e-1538.05Diaminopimelate epimerase OS=Pseudomonas entomophi... [more]
DAPF_PSE148.698e-1538.05Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_GLUOX8.698e-1539.42Diaminopimelate epimerase OS=Gluconobacter oxydans... [more]
DAPF_AERHH1.938e-1439.81Diaminopimelate epimerase OS=Aeromonas hydrophila ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
back to top