CB322179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHIME (Diaminopimelate epimerase OS=Rhizobium meliloti GN=dapF PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 2.289e-15 Identity = 40/101 (39.60%), Postives = 51/101 (50.50%), Query Frame = -3 Query: 85 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 387 L GP E+H +FP R N I S ++ +R WER G ER TV++PGGPL IEW+E D+HV MTGPAE + G+V Sbjct: 179 LDRFGPLLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERMVTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTV 279
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_MANSM (Diaminopimelate epimerase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.989e-15 Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V+ N+ E+GP E+H FP R N F+++I+P+ +K+RV+ER +++G E + VDLPGG L IEW+ E + +YMTG A V+ G + L Sbjct: 167 VETANVTELGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGLLENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_ELUMP (Diaminopimelate epimerase OS=Elusimicrobium minutum (strain Pei191) GN=dapF PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.904e-15 Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 + K ++A+ G + E+++ FP +TN EFV++I+PS+L M+VWER VL ER V+L GG L +EW ++ V+MTGPA VF G Sbjct: 167 IKKTDVAKTGKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAGVLNNKTERLALVELDGGQLTVEWPDDGASVFMTGPATEVFSG 270
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_HALOH (Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.659e-15 Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V+++ ++ G + EH+ +FP +TN EF++I S ++ MRVWER + G + TV LPGG L+IEW+E+D V+MTGPAE V+ G +++ Sbjct: 176 VNQIPVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVAGIKNGLLKNMVTVHLPGGDLNIEWQEQD--VFMTGPAESVYTGKIVI 281
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_DESAH (Diaminopimelate epimerase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.659e-15 Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = -3 Query: 85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402 V K++L +G E H +FPA+TN EFV +++ +L MRVWER L G V L GG L I W ++ NH++ TGPA VF G + Sbjct: 176 VKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASAVLVAASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRI 281
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU2 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dapF PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15 Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = -3 Query: 79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD +N A E+GPK EHH FPAR N F+ ++ + ++RVWER + +G + +DLPGG L IEW + V MTGPA V+ G V L Sbjct: 164 LRVDDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15 Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = -3 Query: 79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD + A E+GPK EHH FP R N F++++ + +RVWER + +G + T+DLPGG L IEW V MTGPA VF G V L Sbjct: 164 LRVDDVRTAPVHELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQGWMDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSE14 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dapF PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15 Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = -3 Query: 79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD +N A E+GPK EHH FPAR N F+ ++ + ++RVWER + +G + +DLPGG L IEW + V MTGPA V+ G V L Sbjct: 164 LRVDDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_GLUOX (Diaminopimelate epimerase OS=Gluconobacter oxydans GN=dapF PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15 Identity = 41/104 (39.42%), Postives = 53/104 (50.96%), Query Frame = -3 Query: 88 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 399 D +GP E +FP R N F +I+SP +++RVWER V G ER CTV + GG L I W+ ED HV+MTGPA VF+G+ Sbjct: 153 DAFRAEALGPGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLTERTCTVTMDGGDLRITWR-EDGHVFMTGPAVTVFHGT 255
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_AERHH (Diaminopimelate epimerase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dapF PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.938e-14 Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = -3 Query: 79 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 387 +A +GP E H FP R N F+E+++ S++K+RV+ER + +G + R TV LPGG L I WK VYMTGPAE VF G + L Sbjct: 174 VATLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQGKLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276 The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bpback to top |