CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9292 contig Csv1_Contig9292:324..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOCS (Diaminopimelate epimerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dapF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13
Identity = 38/105 (36.19%), Postives = 52/105 (49.52%), Query Frame = -3
Query:   85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399
            + ++LA +GP  EHHS+FP R N E  ++++P  ++MRVWER                      G   R   ++L GG L IEW   D HV MTGP    F G +
Sbjct:  167 EAVDLATLGPVLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLTGRAAWIELDGGRLWIEW-HGDGHVLMTGPVATAFTGEL 270          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_AZOVD (Diaminopimelate epimerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dapF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13
Identity = 39/108 (36.11%), Postives = 52/108 (48.15%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            V+   + E+GPK EHH  FP R N  F++++     ++RVWER                   + +G  +    VDLPGG L I W   D  V MTGPA  V+ G V L
Sbjct:  169 VESAPVHELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQGWMDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU5 (Diaminopimelate epimerase OS=Pseudomonas stutzeri (strain A1501) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13
Identity = 41/113 (36.28%), Postives = 55/113 (48.67%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +  A   E+GPK EHH  FP R N  F++++     ++RVWER                   + +G  +    ++LPGG L IEW      V MTGPA  VF G V L
Sbjct:  164 LRVDSVERAPVHELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQGWMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACCN (Diaminopimelate epimerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V+K  L  +GP  E+H +FP R N EF+EI++ +++  RVWER                   +L G  ER    TV L GG L I W EE   V M GPAEV+ +G
Sbjct:  176 VEKAPLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASVVAAILNGKMERGKEITVHLAGGDLMITWTEEGT-VMMKGPAEVICHG 280          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEMY (Diaminopimelate epimerase OS=Pseudomonas mendocina (strain ymp) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = -3
Query:   79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD ++ A +   GPK EHH  FP R N  F++++     ++RVWER                   + +G  +    ++LPGG L IEW  E   V MTGPA  V+ G V L
Sbjct:  164 LRVDNVDSAPVHTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGWMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBA (Diaminopimelate epimerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 42/105 (40.00%), Postives = 50/105 (47.62%), Query Frame = -3
Query:   85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399
            D   + EIGP  E+H  FP R N EFV I     L  R WER                   +L G   R   +DL GG L IEW +E+  V+MTGPA+ VF G V
Sbjct:  175 DDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASILNGKTGRSVRIDLRGGTLHIEW-QENGSVFMTGPAKEVFSGEV 278          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACP2 (Diaminopimelate epimerase OS=Bacillus pumilus (strain SAFR-032) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            ++K  L  +GP  E H +FP   N EFVE++S ++L  RVWER                   ++ G A++    TV L GG L I WK+ + HV MTGPAE +  G+  L
Sbjct:  176 IEKAPLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTIVNGQAKKETDMTVHLAGGDLIIRWKDNE-HVLMTGPAETICDGTFYL 284          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACHK (Diaminopimelate epimerase OS=Bacillus thuringiensis subsp. konkukian GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V++  L  +GP  E H +FP R N EF+EI++  ++  RVWER                   +L G  ER    TV L GG L I W EE N V M GPAEV+ +G
Sbjct:  176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACCR (Diaminopimelate epimerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 43/106 (40.57%), Postives = 53/106 (50.00%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V+K  L  +GP  E H +FP R N EF+EI++  ++  RVWER                   +L G  ER    TV L GG L I W EE N V M GPAEV+  G
Sbjct:  176 VEKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACC7 (Diaminopimelate epimerase OS=Bacillus cereus (strain AH187) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V++  L  +GP  E H +FP R N EF+EI++  ++  RVWER                   +L G  ER    TV L GG L I W EE N V M GPAEV+ +G
Sbjct:  176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_RHOCS1.256e-1336.19Diaminopimelate epimerase OS=Rhodospirillum centen... [more]
DAPF_AZOVD1.256e-1336.11Diaminopimelate epimerase OS=Azotobacter vinelandi... [more]
DAPF_PSEU52.142e-1336.28Diaminopimelate epimerase OS=Pseudomonas stutzeri ... [more]
DAPF_BACCN2.142e-1339.62Diaminopimelate epimerase OS=Bacillus cereus subsp... [more]
DAPF_PSEMY2.798e-1335.40Diaminopimelate epimerase OS=Pseudomonas mendocina... [more]
DAPF_LEPBA2.798e-1340.00Diaminopimelate epimerase OS=Leptospira biflexa se... [more]
DAPF_BACP23.654e-1337.27Diaminopimelate epimerase OS=Bacillus pumilus (str... [more]
DAPF_BACHK3.654e-1339.62Diaminopimelate epimerase OS=Bacillus thuringiensi... [more]
DAPF_BACCR3.654e-1340.57Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACC73.654e-1339.62Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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