CB322179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_RHOCS (Diaminopimelate epimerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dapF PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13 Identity = 38/105 (36.19%), Postives = 52/105 (49.52%), Query Frame = -3 Query: 85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399 + ++LA +GP EHHS+FP R N E ++++P ++MRVWER G R ++L GG L IEW D HV MTGP F G + Sbjct: 167 EAVDLATLGPVLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLTGRAAWIELDGGRLWIEW-HGDGHVLMTGPVATAFTGEL 270
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_AZOVD (Diaminopimelate epimerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dapF PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13 Identity = 39/108 (36.11%), Postives = 52/108 (48.15%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 V+ + E+GPK EHH FP R N F++++ ++RVWER + +G + VDLPGG L I W D V MTGPA V+ G V L Sbjct: 169 VESAPVHELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQGWMDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU5 (Diaminopimelate epimerase OS=Pseudomonas stutzeri (strain A1501) GN=dapF PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13 Identity = 41/113 (36.28%), Postives = 55/113 (48.67%), Query Frame = -3 Query: 79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD + A E+GPK EHH FP R N F++++ ++RVWER + +G + ++LPGG L IEW V MTGPA VF G V L Sbjct: 164 LRVDSVERAPVHELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQGWMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACCN (Diaminopimelate epimerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dapF PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13 Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V+K L +GP E+H +FP R N EF+EI++ +++ RVWER +L G ER TV L GG L I W EE V M GPAEV+ +G Sbjct: 176 VEKAPLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASVVAAILNGKMERGKEITVHLAGGDLMITWTEEGT-VMMKGPAEVICHG 280
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEMY (Diaminopimelate epimerase OS=Pseudomonas mendocina (strain ymp) GN=dapF PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13 Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = -3 Query: 79 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD ++ A + GPK EHH FP R N F++++ ++RVWER + +G + ++LPGG L IEW E V MTGPA V+ G V L Sbjct: 164 LRVDNVDSAPVHTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGWMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBA (Diaminopimelate epimerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dapF PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13 Identity = 42/105 (40.00%), Postives = 50/105 (47.62%), Query Frame = -3 Query: 85 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 399 D + EIGP E+H FP R N EFV I L R WER +L G R +DL GG L IEW +E+ V+MTGPA+ VF G V Sbjct: 175 DDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASILNGKTGRSVRIDLRGGTLHIEW-QENGSVFMTGPAKEVFSGEV 278
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACP2 (Diaminopimelate epimerase OS=Bacillus pumilus (strain SAFR-032) GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13 Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 ++K L +GP E H +FP N EFVE++S ++L RVWER ++ G A++ TV L GG L I WK+ + HV MTGPAE + G+ L Sbjct: 176 IEKAPLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTIVNGQAKKETDMTVHLAGGDLIIRWKDNE-HVLMTGPAETICDGTFYL 284
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACHK (Diaminopimelate epimerase OS=Bacillus thuringiensis subsp. konkukian GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13 Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V++ L +GP E H +FP R N EF+EI++ ++ RVWER +L G ER TV L GG L I W EE N V M GPAEV+ +G Sbjct: 176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACCR (Diaminopimelate epimerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13 Identity = 43/106 (40.57%), Postives = 53/106 (50.00%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V+K L +GP E H +FP R N EF+EI++ ++ RVWER +L G ER TV L GG L I W EE N V M GPAEV+ G Sbjct: 176 VEKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACC7 (Diaminopimelate epimerase OS=Bacillus cereus (strain AH187) GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13 Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V++ L +GP E H +FP R N EF+EI++ ++ RVWER +L G ER TV L GG L I W EE N V M GPAEV+ +G Sbjct: 176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280 The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bpback to top |