CB322179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPG (Diaminopimelate epimerase OS=Pseudomonas putida (strain GB-1) GN=dapF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13 Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = -3 Query: 79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD + A E+GPK E+H FP R N F+++I + +RVWER + +G + ++DLPGG L IEW V MTGPA V+ G V L Sbjct: 164 LRVDDVRTAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CHRVO (Diaminopimelate epimerase OS=Chromobacterium violaceum GN=dapF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13 Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = -3 Query: 79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402 VD +AE+GP E H FP R N F++I++ ++++RV+ER + +G + R TV GG + IEW E + V MTGPA VF G + L Sbjct: 169 VDAAPVAEVGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCGIRQGLLDARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACC2 (Diaminopimelate epimerase OS=Bacillus cereus (strain G9842) GN=dapF PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13 Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V++ L +GP E H +FP R N EF+EI++ +++ RVWER +L G ER TV L GG L I W EE N V M GPAEV+ G Sbjct: 176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_VIBVY (Diaminopimelate epimerase OS=Vibrio vulnificus (strain YJ016) GN=dapF PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12 Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = -3 Query: 85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402 VD + +GP E H FP R N F+++++ Q+++RV+ER +L+G + TV LPGG L I W+ +YMTGPA VF G + Sbjct: 169 VDSAEVETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_VIBVU (Diaminopimelate epimerase OS=Vibrio vulnificus GN=dapF PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12 Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = -3 Query: 85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402 VD + +GP E H FP R N F+++++ Q+++RV+ER +L+G + TV LPGG L I W+ +YMTGPA VF G + Sbjct: 169 VDSAEVETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12 Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = -3 Query: 79 LKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408 L+VD + +A++G + H FP N F+++++P +K+RV+ER L+G R VDLPGG L I W+ E ++MTGPA+ V+ G + L Sbjct: 163 LEVDDITQAPVADVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQLQGKLGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NATTJ (Diaminopimelate epimerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dapF PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12 Identity = 39/110 (35.45%), Postives = 54/110 (49.09%), Query Frame = -3 Query: 85 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 414 QNL ++ L E+GP E H +FP TN EFV++ S + L+++VWER + G V+LPGG L I W +YM GPAE V+ G + Sbjct: 185 QNLLPEE-QLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLACGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGEL 293
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_MESSB (Diaminopimelate epimerase OS=Mesorhizobium sp. (strain BNC1) GN=dapF PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12 Identity = 38/100 (38.00%), Postives = 48/100 (48.00%), Query Frame = -3 Query: 91 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 390 +L GP E+H +FP R N + SP +L MR WER G R V+LPGG L+I W+++D HV MTGPAE F G Sbjct: 178 DLERFGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRTGRGVKVNLPGGSLEILWRDDD-HVIMTGPAEWEFSG 276
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACCZ (Diaminopimelate epimerase OS=Bacillus cereus (strain ZK / E33L) GN=dapF PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12 Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V++ L +GP E H +FP R N EF+EI++ ++ RVWER +L G ER TV L GG L I W EE N V M GPAEV+ G Sbjct: 176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACAN (Diaminopimelate epimerase OS=Bacillus anthracis GN=dapF PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12 Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = -3 Query: 91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402 V++ L +GP E H +FP R N EF+EI++ ++ RVWER +L G ER TV L GG L I W EE N V M GPAEV+ G Sbjct: 176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280 The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bpback to top |