CB322179

Overview
NameCB322179
Unique NameCB322179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPG (Diaminopimelate epimerase OS=Pseudomonas putida (strain GB-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13
Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = -3
Query:   79 LKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +  A   E+GPK E+H  FP R N  F+++I   +  +RVWER                   + +G  +   ++DLPGG L IEW      V MTGPA  V+ G V L
Sbjct:  164 LRVDDVRTAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_CHRVO (Diaminopimelate epimerase OS=Chromobacterium violaceum GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = -3
Query:   79 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 402
            VD   +AE+GP  E H  FP R N  F++I++  ++++RV+ER                   + +G  + R TV   GG + IEW  E + V MTGPA  VF G + L
Sbjct:  169 VDAAPVAEVGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCGIRQGLLDARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACC2 (Diaminopimelate epimerase OS=Bacillus cereus (strain G9842) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13
Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V++  L  +GP  E H +FP R N EF+EI++ +++  RVWER                   +L G  ER    TV L GG L I W EE N V M GPAEV+  G
Sbjct:  176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_VIBVY (Diaminopimelate epimerase OS=Vibrio vulnificus (strain YJ016) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            VD   +  +GP  E H  FP R N  F+++++  Q+++RV+ER                   +L+G  +   TV LPGG L I W+     +YMTGPA  VF G +
Sbjct:  169 VDSAEVETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_VIBVU (Diaminopimelate epimerase OS=Vibrio vulnificus GN=dapF PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = -3
Query:   85 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 402
            VD   +  +GP  E H  FP R N  F+++++  Q+++RV+ER                   +L+G  +   TV LPGG L I W+     +YMTGPA  VF G +
Sbjct:  169 VDSAEVETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = -3
Query:   79 LKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 408
            L+VD +    +A++G +   H  FP   N  F+++++P  +K+RV+ER                    L+G    R  VDLPGG L I W+ E   ++MTGPA+ V+ G + L
Sbjct:  163 LEVDDITQAPVADVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQLQGKLGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_NATTJ (Diaminopimelate epimerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 39/110 (35.45%), Postives = 54/110 (49.09%), Query Frame = -3
Query:   85 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 414
            QNL  ++  L E+GP  E H +FP  TN EFV++ S + L+++VWER                    + G       V+LPGG L I W      +YM GPAE V+ G +
Sbjct:  185 QNLLPEE-QLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLACGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGEL 293          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_MESSB (Diaminopimelate epimerase OS=Mesorhizobium sp. (strain BNC1) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 38/100 (38.00%), Postives = 48/100 (48.00%), Query Frame = -3
Query:   91 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 390
            +L   GP  E+H +FP R N     + SP +L MR WER                      G   R   V+LPGG L+I W+++D HV MTGPAE  F G
Sbjct:  178 DLERFGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRTGRGVKVNLPGGSLEILWRDDD-HVIMTGPAEWEFSG 276          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACCZ (Diaminopimelate epimerase OS=Bacillus cereus (strain ZK / E33L) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V++  L  +GP  E H +FP R N EF+EI++  ++  RVWER                   +L G  ER    TV L GG L I W EE N V M GPAEV+  G
Sbjct:  176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280          
BLAST of CB322179 vs. ExPASy Swiss-Prot
Match: DAPF_BACAN (Diaminopimelate epimerase OS=Bacillus anthracis GN=dapF PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = -3
Query:   91 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 402
            V++  L  +GP  E H +FP R N EF+EI++  ++  RVWER                   +L G  ER    TV L GG L I W EE N V M GPAEV+  G
Sbjct:  176 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280          
The following BLAST results are available for this feature:
BLAST of CB322179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DAPF_PSEPG8.141e-1336.28Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]
DAPF_CHRVO8.141e-1335.19Diaminopimelate epimerase OS=Chromobacterium viola... [more]
DAPF_BACC28.141e-1339.62Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_VIBVY1.063e-1233.96Diaminopimelate epimerase OS=Vibrio vulnificus (st... [more]
DAPF_VIBVU1.063e-1233.96Diaminopimelate epimerase OS=Vibrio vulnificus GN=... [more]
DAPF_SHEAM1.063e-1232.74Diaminopimelate epimerase OS=Shewanella amazonensi... [more]
DAPF_NATTJ1.063e-1235.45Diaminopimelate epimerase OS=Natranaerobius thermo... [more]
DAPF_MESSB1.063e-1238.00Diaminopimelate epimerase OS=Mesorhizobium sp. (st... [more]
DAPF_BACCZ1.063e-1239.62Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACAN1.063e-1239.62Diaminopimelate epimerase OS=Bacillus anthracis GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0300 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB226 similar to diaminopimelate epimerase (acc# NP_190926), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322179 ID=CB322179; Name=CB322179; organism=Citrus sinensis; type=EST; length=425bp
ACATCTTTCTAGCTAACAATGCGCGTCTGCAAAATTCAGGTAATCTGAGA
CAAGGAAGTTCTCGACAATAAATTAATTTAGCAGGACCGATCCATAAAAC
ACTACTTCTGCCGGGCCAGTCATATATACATGGTTGTCTTCCTCCTTCCA
CTCAATATCCAATGGCCCTCCAGGTAGATCAACAGTGCATCTTCTCTCAG
CATGACCCTCAAGAACTGCTGCGACCACAACTGCACAAGCACCAGTCCCA
CATGCCAGGGTTGCTCCAGCCCCACGTTCCCAAACACGCATCTTCAGTTG
TGAAGGAGAAATAATCTCCACAAATTCTGTATTAGTTCGTGCTGGGAACA
CAGAATGATGCTCAAATTTAGGACCAATTTCAGCCAAGTTTAGTTTATCA
ACCTTCAAATTCTGCCCTTCTTTTG
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