CB322185

Overview
NameCB322185
Unique NameCB322185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.017e-25
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES----LDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            D  SESR   VY     +PRDE FGHLK SDFL + LK+++Q + PALES    L+ +PNEFDSFD++  LYEGGI LP N+L  I    P  +LKEIFRTDG+  LK+P P+VI+
Sbjct:  249 DPNSESRSDYVY-----LPRDEAFGHLKSSDFLTYGLKAVSQNVVPALESVFFDLNFTPNEFDSFDEVHGLYEGGIKLPTNILSQIS---PLPVLKEIFRTDGENTLKYPPPKVIQ 356          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.894e-24
Identity = 55/100 (55.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:  208 IYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES---LDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            +YVPRDE FGHLK SDFLA+ +KS++Q + PA ES   L+ +PNEFDSF D+  L+EGGI LP  ++  I   +P  ++KE+FRTDG+ +LKFP P VI+
Sbjct:  267 VYVPRDENFGHLKSSDFLAYGIKSLSQYVLPAFESVFDLNFTPNEFDSFQDVRDLHEGGIKLPTEVISTI---MPLPVVKELFRTDGEQVLKFPPPHVIQ 363          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.879e-23
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES---LDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            D  SESR     S ++Y+PRDE FGHLK SDFL + LKS++Q + P L+S   L+ +P EFDSFD++  LY GGI LP +++  I    P  +LKEIFRTDG+  LKFP P+VI+
Sbjct:  246 DPNSESR-----SNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAFDLNFTPREFDSFDEVHGLYSGGIKLPTDIISKIS---PLPVLKEIFRTDGEQALKFPPPKVIQ 352          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.376e-23
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  211 YVPRDERFGHLKMSDFLAFALKSIAQVIKPALES---LDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            YVPRDE FGHLK SDFLA+ +KS++Q + PA ES   L+ +PNEFDSF D+  L+EGGI LP   LD I    P  ++KEIFRTDG+ +LKF  P VI+
Sbjct:  265 YVPRDENFGHLKSSDFLAYGIKSVSQCVVPAFESAFDLNFTPNEFDSFQDVRNLFEGGIKLP---LDVISTLSPLPVVKEIFRTDGEQVLKFTPPHVIR 360          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.281e-20
Identity = 51/103 (49.51%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  208 IYVPRDERFGHLKMSDFLAFALKSIAQVIKPAL-ESLDSS--PNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDE 504
            +Y+PRDE FGHLK SDFLA+ +KS++Q + P L ++ D +    EFD+F ++ KLYEGG+ LP N L  I    P  ++KEIFRTDG+  LK+P P+V++ D+
Sbjct:  251 VYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVHKLYEGGVTLPTNFLSKI---APIPVIKEIFRTDGEQFLKYPPPKVMQVDK 350          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.891e-20
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  211 YVPRDERFGHLKMSDFLAFALKSIAQVIKPALES---LDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            YVPRDE  GHLK  D L    KS++Q+++PA ES   L S+P EF SF D+  LYEGGI LP +++  I   IP  ++KE++RTDG  +LKFP P V++
Sbjct:  239 YVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTI---IPLPVIKELYRTDGQHILKFPQPHVVQ 334          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  208 IYVPRDERFGHLKMSDFLAFALKSIAQ----VIKPALESLDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            +YVPRDE FGHLK SDFL + +KS++     + K A+  L  + +EF+SF+D+  LYEGGI LP ++L  I    P   LKEIFRTDG+ +L+FP P V K
Sbjct:  261 VYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQIS---PLPALKEIFRTDGENVLQFPPPHVAK 358          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:  208 IYVPRDERFGHLKMSDFLAFALKSIAQVIKPAL-ESLDSS--PNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            +Y+PRDE FGHLK SDFLA+ LKS++Q + P L ++ D +    EFD+F ++ KLYEGG+ LP N L    K+ P  ++KEIFR+DG+  LK+P P+V++
Sbjct:  145 VYLPRDEAFGHLKSSDFLAYGLKSVSQDVLPVLTDAFDGNLLSLEFDNFAEVHKLYEGGVTLPTNFLS---KYAPIPIVKEIFRSDGEQFLKYPPPKVMQ 241          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  211 YVPRDERFGHLKMSDFLAFALKSIAQVIKPALESLDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIK 495
            Y+PRDE FGHLK  DFL +A+KS+ Q + P  +      NEFD+F+D+  L+EGG+ LP    D I K  P  +LKEI RTDG+ +LKFP P VI+
Sbjct:  265 YIPRDENFGHLKSGDFLTYAIKSLTQNVLPTFQKAFGFNNEFDTFEDVRGLFEGGLYLPT---DVISKISPIPVLKEILRTDGEQVLKFPPPHVIR 357          
BLAST of CB322185 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.337e-19
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  163 DSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALES---LDSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKED 501
            + +SESR     S  +Y+PRDE FGH+K SDFL + LKS +Q I P L S   L  +  EF++F+D+  LY+GGI LP ++L  I    P  +  E+FR+DG+  LKFP P+VI+ D
Sbjct:  254 EPQSESR-----SDTVYLPRDEAFGHVKSSDFLVYILKSASQNIVPQLRSVVTLQLNNPEFNTFEDVRSLYDGGIKLPTDVLSKIS---PIPLFSELFRSDGEAALKFPPPKVIQVD 362          
The following BLAST results are available for this feature:
BLAST of CB322185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
LOX3_PEA4.017e-2555.17Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX2_SOYBN9.894e-2455.00Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX3_SOYBN2.879e-2352.17Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX2_PEA8.376e-2357.58Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX4_SOYBN2.281e-2049.51Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX1_SOYBN3.891e-2050.51Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOXX_SOYBN6.636e-2050.50Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXB_PHAVU6.636e-2050.00Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXA_PHAVU6.636e-2051.04Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX1_LENCU7.337e-1946.15Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0306 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB262 similar to lipoxygenase (acc# CAD10740), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322185 ID=CB322185; Name=CB322185; organism=Citrus sinensis; type=EST; length=506bp
GTTGAGTTACTAGTAACAAAAGCCTAATCATTTTAAAGTTAACTTGAATC
TTATATAGATTGGACGACAACTATACTTTATGAATTGCTAGTTTTCAAGT
AATTGAAGTTCTCTCGGTAGCATTGATGCATTCATTAATGGTATTTTGTT
GTTATCATAATAGATTCTAAAAGCGAGAGCAGGCTGTCAATTGTCTATAG
CTTAAACATATATGTTCCAAGAGATGAGCGATTTGGTCACTTGAAGATGT
CAGATTTCCTTGCTTTTGCTCTCAAATCCATAGCCCAAGTCATAAAACCA
GCATTGGAATCTCTAGACAGCAGTCCAAATGAATTTGACTCTTTTGATGA
TATTTTAAAACTCTATGAAGGAGGGATTGATCTGCCAAACAACTTACTTG
ATGATATTAGAAAACACATCCCCTTTGAAATGCTCAAAGAAATTTTTCGA
ACTGATGGTGATCTCTTGAAATTTCCAATGCCACAAGTAATCAAAGAGGA
TGAGTC
back to top