CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SPIOL (Photosystem Q(B) protein OS=Spinacia oleracea GN=psbA PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SOYBN (Photosystem Q(B) protein OS=Glycine max GN=psbA PE=3 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SOLTU (Photosystem Q(B) protein OS=Solanum tuberosum GN=psbA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SOLNI (Photosystem Q(B) protein OS=Solanum nigrum GN=psbA PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SOLLC (Photosystem Q(B) protein OS=Solanum lycopersicum GN=psbA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SOLBU (Photosystem Q(B) protein OS=Solanum bulbocastanum GN=psbA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SINAL (Photosystem Q(B) protein OS=Sinapis alba GN=psbA PE=3 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_POPTR (Photosystem Q(B) protein OS=Populus trichocarpa GN=psbA PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_POPDE (Photosystem Q(B) protein OS=Populus deltoides GN=psbA PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_POPAL (Photosystem Q(B) protein OS=Populus alba GN=psbA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_SPIOL6.869e-4898.94Photosystem Q(B) protein OS=Spinacia oleracea GN=p... [more]
PSBA_SOYBN6.869e-4898.94Photosystem Q(B) protein OS=Glycine max GN=psbA PE... [more]
PSBA_SOLTU6.869e-4898.94Photosystem Q(B) protein OS=Solanum tuberosum GN=p... [more]
PSBA_SOLNI6.869e-4898.94Photosystem Q(B) protein OS=Solanum nigrum GN=psbA... [more]
PSBA_SOLLC6.869e-4898.94Photosystem Q(B) protein OS=Solanum lycopersicum G... [more]
PSBA_SOLBU6.869e-4898.94Photosystem Q(B) protein OS=Solanum bulbocastanum ... [more]
PSBA_SINAL6.869e-4898.94Photosystem Q(B) protein OS=Sinapis alba GN=psbA P... [more]
PSBA_POPTR6.869e-4898.94Photosystem Q(B) protein OS=Populus trichocarpa GN... [more]
PSBA_POPDE6.869e-4898.94Photosystem Q(B) protein OS=Populus deltoides GN=p... [more]
PSBA_POPAL6.869e-4898.94Photosystem Q(B) protein OS=Populus alba GN=psbA P... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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