CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CUSOB (Photosystem Q(B) protein OS=Cuscuta obtusiflora GN=psbA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.210e-46
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT +L+RR+SE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVF+IAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTVVLDRRKSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFLIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CUSGR (Photosystem Q(B) protein OS=Cuscuta gronovii GN=psbA PE=3 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.210e-46
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT +L+RR+SE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVF+IAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTVVLDRRKSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFLIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CONCI (Photosystem Q(B) protein OS=Conocephalum conicum GN=psbA PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.886e-46
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  +WGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASIWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHAVU (Photosystem Q(B) protein OS=Chara vulgaris GN=psbA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.922e-46
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC+W+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIGLHFY
Sbjct:    1 MTATLERRESSNLWGRFCDWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CRYJA (Photosystem Q(B) protein OS=Cryptomeria japonica GN=psbA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.429e-46
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESASLWNRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ANTFO (Photosystem Q(B) protein OS=Anthoceros formosae GN=psbA PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.429e-46
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC+W+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASLWGRFCDWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ANGEV (Photosystem Q(B) protein OS=Angiopteris evecta GN=psbA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.429e-46
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTASLERRESASLWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ADICA (Photosystem Q(B) protein OS=Adiantum capillus-veneris GN=psbA PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.429e-46
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAF+AAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASLWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PINTH (Photosystem Q(B) protein OS=Pinus thunbergii GN=psbA PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 8.396e-46
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAI+ERRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAIIERRESANLWSRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PINCO (Photosystem Q(B) protein OS=Pinus contorta GN=psbA-A PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 8.396e-46
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAI+ERRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAIIERRESANLWSRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_CUSOB2.210e-4693.62Photosystem Q(B) protein OS=Cuscuta obtusiflora GN... [more]
PSBA_CUSGR2.210e-4693.62Photosystem Q(B) protein OS=Cuscuta gronovii GN=ps... [more]
PSBA_CONCI2.886e-4694.68Photosystem Q(B) protein OS=Conocephalum conicum G... [more]
PSBA_CHAVU4.922e-4693.62Photosystem Q(B) protein OS=Chara vulgaris GN=psbA... [more]
PSBA_CRYJA6.429e-4695.74Photosystem Q(B) protein OS=Cryptomeria japonica G... [more]
PSBA_ANTFO6.429e-4694.68Photosystem Q(B) protein OS=Anthoceros formosae GN... [more]
PSBA_ANGEV6.429e-4695.74Photosystem Q(B) protein OS=Angiopteris evecta GN=... [more]
PSBA_ADICA6.429e-4694.68Photosystem Q(B) protein OS=Adiantum capillus-vene... [more]
PSBA_PINTH8.396e-4694.68Photosystem Q(B) protein OS=Pinus thunbergii GN=ps... [more]
PSBA_PINCO8.396e-4694.68Photosystem Q(B) protein OS=Pinus contorta GN=psbA... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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