CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_MARPO (Photosystem Q(B) protein OS=Marchantia polymorpha GN=psbA PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.097e-45
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  +WGRFC+W+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASIWGRFCDWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_HUPLU (Photosystem Q(B) protein OS=Huperzia lucidula GN=psbA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.432e-45
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC+W+TSTENRLYIGWFGVLMIPTLLTAT+VFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASLWGRFCDWVTSTENRLYIGWFGVLMIPTLLTATAVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CONSU (Photosystem Q(B) protein OS=Conocephalum supradecompositum GN=psbA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.432e-45
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  +WGRFCNW+TSTE RLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASIWGRFCNWVTSTETRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHAGL (Photosystem Q(B) protein OS=Chaetosphaeridium globosum GN=psbA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.870e-45
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC+W+TSTENRLYIGWFGV+MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIGLHFY
Sbjct:    1 MTATLERRESASLWGRFCDWVTSTENRLYIGWFGVVMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PINKO (Photosystem Q(B) protein OS=Pinus koraiensis GN=psbA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.443e-45
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAI+ERRES   W RFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAIIERRESANFWSRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_DUMHI (Photosystem Q(B) protein OS=Dumortiera hirsuta GN=psbA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.191e-45
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  +WGRFCNW+TSTENRL IGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASIWGRFCNWVTSTENRLNIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ANEMR (Photosystem Q(B) protein OS=Aneura mirabilis GN=psbA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.167e-45
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  +WGRFC+W+TSTENRLYIGWFGVLMIPTLL ATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASIWGRFCDWVTSTENRLYIGWFGVLMIPTLLAATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHLVU (Photosystem Q(B) protein OS=Chlorella vulgaris GN=psbA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.442e-45
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LW RFC W+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTS AIGLHFY
Sbjct:    1 MTAILERRESASLWARFCEWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ZYGCR (Photosystem Q(B) protein OS=Zygnema circumcarinatum GN=psbA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.283e-45
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC+W+TSTENRLYIGWFGV+MIPTLLTATSVFIIAFIAAPPVDIDGIREPV+GSLL+GNNIISGAI+PTSAAIGLHFY
Sbjct:    1 MTATLERRESASLWGRFCDWVTSTENRLYIGWFGVIMIPTLLTATSVFIIAFIAAPPVDIDGIREPVAGSLLFGNNIISGAIVPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.283e-45
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFPCILGHEAAGIVESVGEGVT+V+PGDHVIP YQAEC ECKFCKS KTNLCGKVR ATG GVMM DRKSRFS+ GKPIYHFMGTSTFSQ+
Sbjct:   58 PEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATGVGVMMADRKSRFSVKGKPIYHFMGTSTFSQY 151          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_MARPO1.097e-4593.62Photosystem Q(B) protein OS=Marchantia polymorpha ... [more]
PSBA_HUPLU1.432e-4593.62Photosystem Q(B) protein OS=Huperzia lucidula GN=p... [more]
PSBA_CONSU1.432e-4593.62Photosystem Q(B) protein OS=Conocephalum supradeco... [more]
PSBA_CHAGL1.870e-4592.55Photosystem Q(B) protein OS=Chaetosphaeridium glob... [more]
PSBA_PINKO2.443e-4593.62Photosystem Q(B) protein OS=Pinus koraiensis GN=ps... [more]
PSBA_DUMHI3.191e-4593.62Photosystem Q(B) protein OS=Dumortiera hirsuta GN=... [more]
PSBA_ANEMR4.167e-4592.55Photosystem Q(B) protein OS=Aneura mirabilis GN=ps... [more]
PSBA_CHLVU5.442e-4593.62Photosystem Q(B) protein OS=Chlorella vulgaris GN=... [more]
PSBA_ZYGCR9.283e-4590.43Photosystem Q(B) protein OS=Zygnema circumcarinatu... [more]
ADHX_PEA9.283e-4588.30Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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