CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SELUN (Photosystem Q(B) protein OS=Selaginella uncinata GN=psbA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.583e-44
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRE+  LWG FC+WITSTENRLYIGWFGVLMIPTLLTATSVFI AFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRENASLWGNFCDWITSTENRLYIGWFGVLMIPTLLTATSVFITAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHLMO (Photosystem Q(B) protein OS=Chlamydomonas moewusii GN=psbA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.583e-44
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LW RFC WITSTENR+YIGWFGV+MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGA+IPTS AIGLHFY
Sbjct:    1 MTAILERRESTSLWARFCEWITSTENRIYIGWFGVIMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVIPTSNAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHLEL (Photosystem Q(B) protein OS=Chlorella ellipsoidea GN=psbA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.528e-44
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LW RFC WITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSG LLYGNNIISGA++PTS AIGLHFY
Sbjct:    1 MTAILERRESASLWARFCEWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGYLLYGNNIISGAVVPTSNAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHLAT (Photosystem Q(B) protein OS=Chlorokybus atmophyticus GN=psbA PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.528e-44
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC+WITST+NRLYIGWFGVLMIP LLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIGLHFY
Sbjct:    1 MTATLERRESASLWSRFCDWITSTDNRLYIGWFGVLMIPLLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_LEPTE (Photosystem Q(B) protein OS=Leptosira terrestris GN=psbA PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.859e-44
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRE+  LW RFC W+TSTENRLYIGWFG LMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGA++PTS AIGLHFY
Sbjct:    1 MTAILERRETTSLWARFCEWVTSTENRLYIGWFGCLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_GRATL (Photosystem Q(B) protein OS=Gracilaria tenuistipitata var. liui GN=psbA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.859e-44
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC WITSTENRLYIGWFGVLMIPTLLTATSVFIIAF+AAPPVDIDGIREPV+GSLLYGNNIISGAIIP+SAAIG+HFY
Sbjct:    1 MTATLERRESASLWERFCTWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAIIPSSAAIGIHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PSEAK (Photosystem Q(B) protein OS=Pseudendoclonium akinetum GN=psbA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.026e-43
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRE+  LW RFC W+TSTENRLY+GWFGV+MIPTLLTA SVFIIAF+AAPPVDIDGIREPVSGSLLYGNNIISGAIIPTS AIGLHFY
Sbjct:    1 MTAILERREASSLWARFCEWVTSTENRLYVGWFGVIMIPTLLTAVSVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSNAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_BIGNA (Photosystem Q(B) protein OS=Bigelowiella natans GN=psbA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.340e-43
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAI+ERRE+  LW RFC WITSTENRLYIGWFGVLM+PTLLTAT+VFII FIAAPPVDIDGIREPVSGSLLYGNNIISGAI+PTS AIGLHFY
Sbjct:    1 MTAIIERRENSSLWARFCEWITSTENRLYIGWFGVLMVPTLLTATTVFIIGFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSNAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PORYE (Photosystem Q(B) protein OS=Porphyra yezoensis GN=psbA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.751e-43
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA L+RRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAF+AAPPVDIDGIREPV+GSLLYGNNIISGA+IP+SAAIG+HFY
Sbjct:    1 MTATLQRRESASLWERFCSWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSAAIGIHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PORPU (Photosystem Q(B) protein OS=Porphyra purpurea GN=psbA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.751e-43
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA L+RRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAF+AAPPVDIDGIREPV+GSLLYGNNIISGA+IP+SAAIG+HFY
Sbjct:    1 MTATLQRRESASLWERFCSWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSAAIGIHFY 94
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_SELUN1.583e-4492.55Photosystem Q(B) protein OS=Selaginella uncinata G... [more]
PSBA_CHLMO1.583e-4491.49Photosystem Q(B) protein OS=Chlamydomonas moewusii... [more]
PSBA_CHLEL3.528e-4491.49Photosystem Q(B) protein OS=Chlorella ellipsoidea ... [more]
PSBA_CHLAT3.528e-4491.49Photosystem Q(B) protein OS=Chlorokybus atmophytic... [more]
PSBA_LEPTE7.859e-4489.36Photosystem Q(B) protein OS=Leptosira terrestris G... [more]
PSBA_GRATL7.859e-4490.43Photosystem Q(B) protein OS=Gracilaria tenuistipit... [more]
PSBA_PSEAK1.026e-4388.30Photosystem Q(B) protein OS=Pseudendoclonium akine... [more]
PSBA_BIGNA1.340e-4388.30Photosystem Q(B) protein OS=Bigelowiella natans GN... [more]
PSBA_PORYE1.751e-4388.30Photosystem Q(B) protein OS=Porphyra yezoensis GN=... [more]
PSBA_PORPU1.751e-4388.30Photosystem Q(B) protein OS=Porphyra purpurea GN=p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
back to top