CB322187 | Citrus Genome Database

Overview


Name	CB322187
Unique Name	CB322187
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	623

Libraries


Library Name	Type
Mature leaf blade cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PALPL (Photosystem Q(B) protein OS=Palmaria palmata GN=psbA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.751e-43
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC WITSTENRLYIGWFGV+MIPTLLTATSVFIIAF+AAPPVDIDGIREPV+GSLLYGNNIISGAIIP+SAAIG+HFY
Sbjct:    1 MTATLERRESASLWERFCTWITSTENRLYIGWFGVVMIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAIIPSSAAIGIHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_OSTTA (Photosystem Q(B) protein OS=Ostreococcus tauri GN=psbA1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.751e-43
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERR +  +WGRFC+WITSTENRLYIGWFGVLMIPTLLTATSVFI+AFIAAPPVDIDGIREPVSGSL+YGNNIISGA+IPTS AIGLHFY
Sbjct:    1 MTATLERRANATVWGRFCSWITSTENRLYIGWFGVLMIPTLLTATSVFIVAFIAAPPVDIDGIREPVSGSLMYGNNIISGAVIPTSNAIGLHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHLRE (Photosystem Q(B) protein OS=Chlamydomonas reinhardtii GN=psbA-A PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.751e-43
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRE+  LW RFC WITSTENRLYIGWFGV+MIP LLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNII+GA+IPTS AIGLHFY
Sbjct:    1 MTAILERRENSSLWARFCEWITSTENRLYIGWFGVIMIPCLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVIPTSNAIGLHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_STAPU (Photosystem Q(B) protein OS=Staurastrum punctulatum GN=psbA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.287e-43
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC+WITSTENRLYIGWFGVLM P LLTATSVFIIAFIAAPPVDIDGIREPV+GSLLYGNNIISGAI+P+SAAIGLHFY
Sbjct:    1 MTATLERRESANLWARFCDWITSTENRLYIGWFGVLMFPLLLTATSVFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSAAIGLHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_OLTVI (Photosystem Q(B) protein OS=Oltmannsiellopsis viridis GN=psbA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.986e-43
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRE+   W +FCNWITSTENRLYIGWFGV+MIP LLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGA+IPTS AIGLHFY
Sbjct:    1 MTAILERREATSRWAQFCNWITSTENRLYIGWFGVIMIPCLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVIPTSNAIGLHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_NEPOL (Photosystem Q(B) protein OS=Nephroselmis olivacea GN=psbA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.900e-43
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  +W RFC+W+TSTENRLYIGWFGVLMIP LLTATSVFII FIAAPPVDIDGIREPVSGSLL+GNNIISGAIIP+SAAIG+HFY
Sbjct:    1 MTAILERRESTSVWARFCDWVTSTENRLYIGWFGVLMIPLLLTATSVFIIGFIAAPPVDIDGIREPVSGSLLFGNNIISGAIIPSSAAIGIHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_GUITH (Photosystem Q(B) protein OS=Guillardia theta GN=psbA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.653e-43
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTAT+VFIIAFIAAPPVDIDGIREPV+GSLLYGNNII+GA+IP+SA+IG+HFY
Sbjct:    1 MTATLERRESASLWERFCSWITSTENRLYIGWFGVLMIPTLLTATTVFIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSASIGIHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SCEOB (Photosystem Q(B) protein OS=Scenedesmus obliquus GN=psbA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.689e-43
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAIL + E+  LW RFC WITSTENRLYIGWFGV+MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGA++PTS AIGLHFY
Sbjct:    1 MTAILAKNEASSLWARFCEWITSTENRLYIGWFGVIMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_RHDSA (Photosystem Q(B) protein OS=Rhodomonas salina GN=psbA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.302e-42
Identity = 80/94 (85.11%), Postives = 90/94 (95.74%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC+WITST+NRLYIGWFGVLMIPTLLTAT+V+IIAFIAAPPVDIDGIREPV+GSLLYGNNII+GA+IP+SA+IG+HFY
Sbjct:    1 MTATLERRESASLWERFCSWITSTDNRLYIGWFGVLMIPTLLTATTVYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSASIGIHFY 94

[Close]

BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CYACA (Photosystem Q(B) protein OS=Cyanidium caldarium GN=psbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.255e-41
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1

Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  LERRES  LW RFC+WITSTENRLYIGWFGVLMIP LLTAT+VFIIAFIAAPPVDIDGIREPVSGSLLYGNNII+GA++PTS AIGLH Y
Sbjct:    1 MTVTLERRESTSLWERFCSWITSTENRLYIGWFGVLMIPCLLTATTVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPTSNAIGLHLY 94

The following BLAST results are available for this feature:

BLAST of CB322187 vs. ExPASy Swiss-Prot

BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340


Match Name	E-value	Identity	Description
PSBA_PALPL	1.751e-43	89.36	Photosystem Q(B) protein OS=Palmaria palmata GN=ps...	[more]
PSBA_OSTTA	1.751e-43	88.30	Photosystem Q(B) protein OS=Ostreococcus tauri GN=...	[more]
PSBA_CHLRE	1.751e-43	89.36	Photosystem Q(B) protein OS=Chlamydomonas reinhard...	[more]
PSBA_STAPU	2.287e-43	89.36	Photosystem Q(B) protein OS=Staurastrum punctulatu...	[more]
PSBA_OLTVI	2.986e-43	89.36	Photosystem Q(B) protein OS=Oltmannsiellopsis viri...	[more]
PSBA_NEPOL	3.900e-43	88.30	Photosystem Q(B) protein OS=Nephroselmis olivacea ...	[more]
PSBA_GUITH	6.653e-43	87.23	Photosystem Q(B) protein OS=Guillardia theta GN=ps...	[more]
PSBA_SCEOB	8.689e-43	87.23	Photosystem Q(B) protein OS=Scenedesmus obliquus G...	[more]
PSBA_RHDSA	3.302e-42	85.11	Photosystem Q(B) protein OS=Rhodomonas salina GN=p...	[more]
PSBA_CYACA	1.255e-41	86.17	Photosystem Q(B) protein OS=Cyanidium caldarium GN...	[more]

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Properties


Property Name	Value
Genbank description	EST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC