CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_BUMFI (Photosystem Q(B) protein OS=Bumilleriopsis filiformis GN=psbA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.255e-41
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTAT+ +IIAFIAAPPVDIDGIREPV+GSLLYGNNIISGA+IP+S AIG+HFY
Sbjct:    1 MTATLERRESISLWERFCSWITSTENRLYIGWFGVLMIPTLLTATTCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_HETCA (Photosystem Q(B) protein OS=Heterosigma carterae GN=psbA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.140e-41
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC+WITSTENRLYIGWFGVLMIPTLLTATS +IIAFIAAPPVDIDGIREPV+GSL+YGNNII+GA+IP+S AIG+HFY
Sbjct:    1 MTATLERRESFSLWERFCSWITSTENRLYIGWFGVLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLMYGNNIITGAVIPSSNAIGVHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ANTSP (Photosystem Q(B) protein OS=Antithamnion sp. GN=psbA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.795e-41
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LW RFC WIT  ENRLYIGWFGV+MIPTLLTATSVFIIA  AAPPVDIDGIREPV+GSLLYGNNIISGAIIP+SAAIG+HFY
Sbjct:    1 MTATLERRESASLWARFCTWITMNENRLYIGWFGVVMIPTLLTATSVFIIACFAAPPVDIDGIREPVAGSLLYGNNIISGAIIPSSAAIGIHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CYCTA (Photosystem Q(B) protein OS=Cycas taitungensis GN=psbA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.768e-41
Identity = 83/94 (88.30%), Postives = 85/94 (90.43%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILE+RES  LWGRFC+WITSTENRLYIGWFGVLMIPT L ATSVFIIAFIAAPPV IDGIREPV GSLLYGNNI  GAIIPTSAAIGLH Y
Sbjct:    1 MTAILEKRESASLWGRFCDWITSTENRLYIGWFGVLMIPTPLVATSVFIIAFIAAPPVYIDGIREPVPGSLLYGNNIRYGAIIPTSAAIGLHLY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_MESVI (Photosystem Q(B) protein OS=Mesostigma viride GN=psbA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.227e-41
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFC +ITSTENRLYIGWFGV+MIP LLTA SV+IIAF+AAPPVDIDGIREPVSGSLLYGNNIISG++IP S AIGLHFY
Sbjct:    1 MTATLERRESANLWGRFCEFITSTENRLYIGWFGVIMIPCLLTAISVYIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGSVIPMSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_STIHE (Photosystem Q(B) protein OS=Stigeoclonium helveticum GN=psbA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.132e-41
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILE+ E + LW RF  WI STENRLYIGWFGVLMIP LLTATSVFIIAF+AAPPVDIDGIREPVSGSLLYGNNIISGA++PTS AIGLHFY
Sbjct:    1 MTAILEKTEVQSLWARFAAWIVSTENRLYIGWFGVLMIPCLLTATSVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CYAME (Photosystem Q(B) protein OS=Cyanidioschyzon merolae GN=psbA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.062e-40
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA L+RR S  LW RFC WITSTENRLYIGWFGVLMIP LLTAT VFIIAF+AAPPVDIDGIREPVSGSL YGNNII+GA++PTS AIGLHFY
Sbjct:    1 MTATLQRRASANLWERFCAWITSTENRLYIGWFGVLMIPCLLTATCVFIIAFVAAPPVDIDGIREPVSGSLFYGNNIITGAVVPTSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_THEVL (Photosystem Q(B) protein OS=Thermosynechococcus vulcanus GN=psbA PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.812e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  L+RRES  LW RFCNW+TST+NRLY+GWFGV+MIPTLL AT  F+IAFIAAPPVDIDGIREPVSGSLLYGNNII+GA++P+S AIGLHFY
Sbjct:    1 MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_THEEB (Photosystem Q(B) protein 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=psbA1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.812e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  L+RRES  LW RFCNW+TST+NRLY+GWFGV+MIPTLL AT  F+IAFIAAPPVDIDGIREPVSGSLLYGNNII+GA++P+S AIGLHFY
Sbjct:    1 MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNEN (Photosystem Q(B) protein 1 OS=Synechococcus elongatus naegeli GN=psbA1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.812e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  L+RRES  LW RFCNW+TST+NRLY+GWFGV+MIPTLL AT  F+IAFIAAPPVDIDGIREPVSGSLLYGNNII+GA++P+S AIGLHFY
Sbjct:    1 MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFY 94          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_BUMFI1.255e-4186.17Photosystem Q(B) protein OS=Bumilleriopsis filifor... [more]
PSBA_HETCA2.140e-4185.11Photosystem Q(B) protein OS=Heterosigma carterae G... [more]
PSBA_ANTSP2.795e-4186.17Photosystem Q(B) protein OS=Antithamnion sp. GN=ps... [more]
PSBA_CYCTA4.768e-4188.30Photosystem Q(B) protein OS=Cycas taitungensis GN=... [more]
PSBA_MESVI6.227e-4185.11Photosystem Q(B) protein OS=Mesostigma viride GN=p... [more]
PSBA_STIHE8.132e-4185.11Photosystem Q(B) protein OS=Stigeoclonium helvetic... [more]
PSBA_CYAME1.062e-4084.04Photosystem Q(B) protein OS=Cyanidioschyzon merola... [more]
PSBA_THEVL1.812e-4079.79Photosystem Q(B) protein OS=Thermosynechococcus vu... [more]
PSBA1_THEEB1.812e-4079.79Photosystem Q(B) protein 1 OS=Thermosynechococcus ... [more]
PSBA1_SYNEN1.812e-4079.79Photosystem Q(B) protein 1 OS=Synechococcus elonga... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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