CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA2_ACAM1 (Photosystem Q(B) protein 2 OS=Acaryochloris marina (strain MBIC 11017) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.435e-37
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT +L+RRES   W RFC++ITST NRLYIGWFGVLMIPTLLTA + F+IAFI APPVDIDGIREPV+GSLLYGNNII+GA++P+S AIGLH Y
Sbjct:    1 MTTVLQRRESASAWERFCSFITSTNNRLYIGWFGVLMIPTLLTAVTCFVIAFIGAPPVDIDGIREPVAGSLLYGNNIITGAVVPSSNAIGLHLY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNS3 (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9311) GN=psbA2 PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 7.124e-37
Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  +++R     W +FC+W+TST NRLY+GWFGVLMIPTLL AT+ FI+AFIAAPPVDIDGIREPV+GSL+YGNNIISGA++P+S AIGLHFY
Sbjct:    1 MTTTIQQRSGANGWQQFCDWVTSTNNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLMYGNNIISGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNS3 (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain CC9311) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.124e-37
Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  +++R     W +FC+W+TST NRLY+GWFGVLMIPTLL AT+ FI+AFIAAPPVDIDGIREPV+GSL+YGNNIISGA++P+S AIGLHFY
Sbjct:    1 MTTTIQQRSGANGWQQFCDWVTSTNNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLMYGNNIISGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNR3 (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain RCC307) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.305e-37
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            M   +++R     W +FC W+TST+NRLY+GWFGVLMIPTLL AT+ FI+AFIAAPPVDIDGIREPV+GSLLYGNNIISGA++P+S AIGLHFY
Sbjct:    1 MQTTIQQRSGASAWQQFCEWVTSTDNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNPW (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain WH7803) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.587e-36
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  +++R     W  FC W+TST NRLY+GWFGVLMIPTLL AT+ FI+AFIAAPPVDIDGIREPV+GSL+YGNNIISGA++P+S AIGLHFY
Sbjct:    1 MTTTIQQRSGANGWQSFCEWVTSTNNRLYVGWFGVLMIPTLLAATTCFIVAFIAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA3_SYNPX (Photosystem Q(B) protein 3 OS=Synechococcus sp. (strain WH8102) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  L++R     W  FC W+TST NRLY+GWFGVLMIPTLL AT  F+IAF+AAPPVDIDGIREPV+GSL+YGNNIISGA++P+S AIGLHFY
Sbjct:    1 MTTTLQQRSGASSWQAFCEWVTSTNNRLYVGWFGVLMIPTLLAATICFVIAFVAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNSC (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain CC9605) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  L++R     W  FC W+TST NRLY+GWFGVLMIPTLL AT  F+IAF+AAPPVDIDGIREPV+GSL+YGNNIISGA++P+S AIGLHFY
Sbjct:    1 MTTTLQQRSGASSWQAFCEWVTSTNNRLYVGWFGVLMIPTLLAATICFVIAFVAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNPX (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain WH8102) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  L++R     W  FC W+TST NRLY+GWFGVLMIPTLL AT  F+IAF+AAPPVDIDGIREPV+GSL+YGNNIISGA++P+S AIGLHFY
Sbjct:    1 MTTTLQQRSGASSWQAFCEWVTSTNNRLYVGWFGVLMIPTLLAATICFVIAFVAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNY3 (Photosystem Q(B) protein 1 OS=Synechocystis sp. (strain PCC 6803) GN=psbA1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 1
Query:  364 ESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            + + LW RFC WITST NRLYIGWFGVLMIPTLLTAT+ FIIAFIAAPPVDIDGIREP++GSLLYGNNII+ A++P+S AIGLHFY
Sbjct:    9 QEQSLWSRFCCWITSTSNRLYIGWFGVLMIPTLLTATTCFIIAFIAAPPVDIDGIREPIAGSLLYGNNIITAAVVPSSNAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNS9 (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9902) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.536e-36
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT  +++R     W  FC W+TST NRLY+GWFGVLMIPTLL AT  F+IAF+AAPPVDIDGIREPV+GSL+YGNNIISGA++P+S AIGLHFY
Sbjct:    1 MTTTIQQRSGASSWQSFCEWVTSTNNRLYVGWFGVLMIPTLLAATICFVIAFVAAPPVDIDGIREPVAGSLMYGNNIISGAVVPSSNAIGLHFY 94          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA2_ACAM11.435e-3776.60Photosystem Q(B) protein 2 OS=Acaryochloris marina... [more]
PSBA2_SYNS37.124e-3772.34Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA1_SYNS37.124e-3772.34Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNR39.305e-3772.34Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNPW1.587e-3672.34Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA3_SYNPX2.073e-3672.34Photosystem Q(B) protein 3 OS=Synechococcus sp. (s... [more]
PSBA1_SYNSC2.073e-3672.34Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNPX2.073e-3672.34Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNY32.707e-3680.23Photosystem Q(B) protein 1 OS=Synechocystis sp. (s... [more]
PSBA2_SYNS93.536e-3671.28Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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