CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP I GHEA GI+ESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ D KSRFSINGKPIYHF+GTSTFS++
Sbjct:   62 VFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTVRGVMIGDGKSRFSINGKPIYHFVGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP I GHEA GIVESVGEGVT++ PGDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ D KSRFSINGKPIYHF+GTSTFS++
Sbjct:   62 VFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP I GHEA GIVESVGEGVT++ PGDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ D KSRFSINGKPIYHF+GTSTFS++
Sbjct:   62 VFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP I GHEA GI+ESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ D KSRFSINGKPIYHF+GTSTFS++
Sbjct:   62 VFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIADGKSRFSINGKPIYHFVGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.220e-30
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG+FP +LGHE AG+V +VGEGV  V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RFS  G+PIYH+MG STFS++
Sbjct:   61 PEGVFPVVLGHEGAGVVVAVGEGVLSVKPGDHVIPLYTAECGECEFCRSGKTNLCVSVRDTQGKG-LMPDCTTRFSYQGQPIYHYMGCSTFSEY 153          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.899e-30
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP I GHEA GIVESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ D KSRFSI GKPIYHF+GTSTFS++
Sbjct:   62 MFPRIFGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTDRGVMIGDGKSRFSIGGKPIYHFVGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.786e-30
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFP +LGHE AGIV  VGEGVT VQ GDHVIP Y AEC +C FC+SGKTNLC  VR   G GV M D  SRFS NG+ +YH+MG STFS++
Sbjct:   52 PEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGV-MPDGTSRFSYNGQSLYHYMGCSTFSEY 144          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y   C EC+FC+SGKTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS++
Sbjct:   52 PEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEY 144          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.459e-30
Identity = 60/94 (63.83%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFPC+LGHE AGIVESVG+ V  V+PGDHVI  Y AEC +CKFC SGKTNLCG VR   G GVM +      +  G+ IYHFMG STFS++
Sbjct:   61 PEGLFPCVLGHEGAGIVESVGDDVITVKPGDHVIALYTAECGKCKFCTSGKTNLCGAVRATQGKGVMPDGTTRFHNAKGEDIYHFMGCSTFSEY 154          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.439e-29
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQFFAEFV-CL 303
            LFP I GHEA GIVESVGEGVT+++ GDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ND KSRFSI GKPIYHF+GTSTFS +    V CL
Sbjct:   63 LFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKECDHCKSEESNMCDLLRINTDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCL 161          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
ADH1_PENAM1.700e-3064.84Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADH1_ORYSJ1.700e-3064.84Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI1.700e-3064.84Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADH1_MAIZE1.700e-3064.84Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
FRMA_HAEIN2.220e-3063.83S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH1_HORVU2.899e-3064.84Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
FRMA_SYNY33.786e-3067.02S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FRMA_ECOL64.945e-3062.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FADH_YEAST6.459e-3063.83S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH_FRAAN1.439e-2962.63Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
back to top