CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.468e-29
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP ILGHEA GIVESVGEGVTE+ PGDHV+P +  EC+EC  CKS ++N+C  +R     GVM+ D KSRF+I GKPI+HF+GTSTFS++
Sbjct:   62 VFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGVMIGDGKSRFTIKGKPIFHFVGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.141e-29
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            LFP I GHEA GIVESVGEGVT ++PGDH +P +  EC EC  CKS ++N+C  +R  T  GVM+ND KSRFSI G+P++HF+GTSTFS++
Sbjct:   63 LFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEY 153          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.141e-29
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            LFP I GHEA GIVESVGEGVT ++PGDH +P +  EC EC  CKS ++N+C  +R  T  GVM+ND KSRFSI G+P++HF+GTSTFS++
Sbjct:   63 LFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEY 153          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 9.326e-29
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFP ILGHE AGIVESVG  VT VQ GD VI  Y  EC+ CKFCKSGKTNLCG++R   G G +M D  SRFS NG  + HFMG STFS++
Sbjct:   62 PEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKG-LMPDGTSRFSCNGNTLLHFMGCSTFSEY 154          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.218e-28
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP ILGHEA GIVESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R     GVM+ D KSRF+I+G+PI+HF+GTSTFS++
Sbjct:   62 VFPRILGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECAHCKSEESNMCDLLRINVDRGVMIGDGKSRFTISGQPIFHFVGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH1_PETHY (Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.218e-28
Identity = 55/91 (60.44%), Postives = 75/91 (82.42%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            LFP I GHEA GIVESVGEGVT+++PGDHV+P +  EC++C+ CKS ++N+C  +R  T  GVM++D ++RFS +GKPIYHF+GTSTFS++
Sbjct:   64 LFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRINTDRGVMIHDGQTRFSKDGKPIYHFVGTSTFSEY 154          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_HETNI (Photosystem Q(B) protein OS=Heterocapsa niei GN=psbA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            WG    +I ST NRLYIGWFG+LM P L+ AT  FI AFI APPVDIDGIREPV+G+LLYGNNIISGA+IP+S AIG+HFY
Sbjct:   17 WGYVIGFILSTSNRLYIGWFGILMFPLLVLATVAFISAFIFAPPVDIDGIREPVAGALLYGNNIISGAVIPSSNAIGVHFY 97          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +M D  SRF+  GKPI HFMGTSTFS++
Sbjct:   57 PEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-LMPDGTSRFTCKGKPILHFMGTSTFSEY 149          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG+FP +LGHE AGIVESVGEGVT+ + GD VIP Y  +C ECKFCK+ KTNLC K+R   G G+M N   SRFS NG+ ++HFMG+STFS++
Sbjct:   58 PEGVFPSVLGHEGAGIVESVGEGVTKFKSGDAVIPLYVPQCGECKFCKNPKTNLCQKIRLTQGKGLMPNG-TSRFSCNGQVLFHFMGSSTFSEY 150          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP ILGHE AG+VESVGEGVT+ + GD VIP Y  +C ECKFCK+ KTNLC K+R   G G +M D  SRF+  GK ++HFMGTSTFS++
Sbjct:   58 PEGAFPVILGHEGAGLVESVGEGVTKFKAGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGRG-LMPDNTSRFTCKGKQLFHFMGTSTFSEY 150          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
ADH2_ORYSI5.468e-2962.64Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
ADH1_TRIRP7.141e-2961.54Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH1_PEA7.141e-2961.54Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
FADH2_SCHPO9.326e-2965.96Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH2_MAIZE1.218e-2861.54Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADH1_PETHY1.218e-2860.44Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1... [more]
PSBA_HETNI1.591e-2872.84Photosystem Q(B) protein OS=Heterocapsa niei GN=ps... [more]
ADHX_RAT1.591e-2864.89Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADHL_GADMO1.591e-2862.77Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHH_GADMO1.591e-2862.77Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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