CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_HETPY (Photosystem Q(B) protein OS=Heterocapsa pygmaea GN=psbA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            WG    +I ST NRLYIGWFG+LM P L+ AT  +I AFI APPVDIDGIREPV+G+LLYGNNIISGA+IP+S AIG+HFY
Sbjct:   18 WGYVIGFILSTSNRLYIGWFGILMFPLLVLATVAYIAAFIFAPPVDIDGIREPVAGALLYGNNIISGAVIPSSNAIGVHFY 98          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP ILGHE AGIVESVGEGVT+ +PGD VIP Y  +C ECKFC + KTNLC K+R   G GV M D  SRF+  GK + HFMGTSTFS++
Sbjct:   56 PEGSFPVILGHEGAGIVESVGEGVTKFKPGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGV-MPDGTSRFTCKGKQVLHFMGTSTFSEY 148          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            +FP ILGHEA GIVESVGEGVTE+ PGDHV+P +  EC+EC  C S ++NLC  +R     GVM++D +SRF+I+GKPI+HF+GTSTFS++
Sbjct:   62 VFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKECAHCMSEESNLCDLLRINVDRGVMIDDGQSRFTIDGKPIFHFLGTSTFSEY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP +LGHE AGIVESVGEGVT+ +PGD VIP Y  +C ECKFC + KTNLC K+R   G G MM D  SR +  GK +YHFMG STFS++
Sbjct:   59 PEGSFPVVLGHEGAGIVESVGEGVTKFKPGDSVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-MMPDGTSRLTCRGKSLYHFMGASTFSEY 151          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +M D  SRF+  GK ++HFMGTSTFS++
Sbjct:   57 PEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-LMPDGTSRFTCKGKSVFHFMGTSTFSEY 149          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_HETRO (Photosystem Q(B) protein OS=Heterocapsa rotundata GN=psbA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            WG    ++ ST NRLYIGWFG+LM P +  AT  +I AFI APPVDIDGIREPV+G+LLYGNNIISGA+IP+S AIG+HFY
Sbjct:   18 WGYVIGFLLSTSNRLYIGWFGILMFPLISLATVAYIAAFIFAPPVDIDGIREPVAGALLYGNNIISGAVIPSSNAIGVHFY 98          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 121.709 bits (304), Expect = 3.000e-27
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +M D  SRF+  GK I H+MGTSTFS++
Sbjct:   57 PEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-LMPDGTSRFTCKGKTILHYMGTSTFSEY 149          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.918e-27
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP ILGHE AGIVESVGEGVT ++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +M D  SRF+  GK I H+MGTSTFS++
Sbjct:   57 PEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-LMPDGTSRFTCKGKTILHYMGTSTFSEY 149          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.117e-27
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPIYHFMGTSTFSQF 282
            PEGLFP ILGHE AG+V  VG GVT V+PG+HVIP Y  ECR+C  C SGKTNLC  +R   G G +M D  SRFS ++G PI+H+MG STFS +
Sbjct:   52 PEGLFPSILGHEGAGVVVEVGPGVTSVKPGNHVIPLYTPECRQCASCLSGKTNLCTAIRATQGQG-LMPDGTSRFSMLDGTPIFHYMGCSTFSNY 145          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 120.939 bits (302), Expect = 5.117e-27
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    4 EGL-FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV---RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            EGL FP I+GHEAAGIVES+G GVT V+PGD VIP Y   CR+CKFC S  TNLCGK+   +       +M D+ SRF+  GKP+YHF GTSTFSQ+
Sbjct:   59 EGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQY 155          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_HETPY2.714e-2871.60Photosystem Q(B) protein OS=Heterocapsa pygmaea GN... [more]
ADHX_UROHA2.714e-2864.89Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADH2_HORVU2.714e-2861.54Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
ADHX_MYXGL6.045e-2862.77Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADHX_MOUSE6.045e-2862.77Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
PSBA_HETRO1.759e-2769.14Photosystem Q(B) protein OS=Heterocapsa rotundata ... [more]
ADHX_HUMAN3.000e-2762.77Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHX_RABIT3.918e-2762.77Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
FADH_PARDE5.117e-2761.05S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADH4_HUMAN5.117e-2760.82Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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