CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_AMPOP (Photosystem Q(B) protein OS=Amphidinium operculatum GN=psbA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            WG F   ITS+ NRLYIGWFG+L+ P L  AT  +I AF  AP VDIDGIREPV+GSL+YGNNIISGA+IP+S AIG+HFY
Sbjct:   10 WGSFVQTITSSSNRLYIGWFGLLVFPLLSLATVAYITAFFLAPAVDIDGIREPVAGSLIYGNNIISGAVIPSSNAIGVHFY 90          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_AMPCA (Photosystem Q(B) protein OS=Amphidinium carterae GN=psbA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            WG F   ITS+ NRLYIGWFG+L+ P L  AT  +I AF  AP VDIDGIREPV+GSL+YGNNIISGA+IP+S AIG+HFY
Sbjct:   10 WGSFVQTITSSSNRLYIGWFGLLVFPLLSLATVAYITAFFLAPAVDIDGIREPVAGSLIYGNNIISGAVIPSSNAIGVHFY 90          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA1_ACAM1 (Photosystem Q(B) protein 1 OS=Acaryochloris marina (strain MBIC 11017) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.729e-27
Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            W +FC WITST NRLY+GWFG+LMIP+L  +   F++A++AAP VD++GIREP+  SLL G+N+I+ A+IPTSAAIGLH Y
Sbjct:   17 WDQFCEWITSTHNRLYVGWFGLLMIPSLFVSAITFMLAWVAAPSVDMEGIREPIISSLLGGSNVITAAVIPTSAAIGLHLY 97          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.729e-27
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG FP ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + +TNLC K+R   G G +M D  SRF+  GK I H+MGTSTFS++
Sbjct:   57 PEGSFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPQTNLCQKIRTTQGKG-LMPDGTSRFTCKGKTILHYMGTSTFSEY 149          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.729e-27
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPIYHFMGTSTFSQF 282
            PEG+FP ILGHE AG+V  VG GVT V+PGDHVIP Y  ECR+C  C S KTNLC  +RG  G G +M D  SRFS ++G PI H+MG STFS +
Sbjct:   52 PEGMFPAILGHEGAGVVVEVGPGVTSVKPGDHVIPLYTPECRQCPSCLSQKTNLCTAIRGTQGQG-LMPDGTSRFSMLDGTPILHYMGCSTFSNY 145          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    4 EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            EG FP + GHE AG+VESVGEGV  V+ GD V+  Y  ECRECKFC SGKTNLCGK+R   G G ++ D  SRF   GK ++H+MG S+FSQ+
Sbjct:   60 EGSFPVVFGHEGAGVVESVGEGVESVKVGDSVVLLYTPECRECKFCLSGKTNLCGKIRATQGKG-LLPDGTSRFRCKGKDLFHYMGCSSFSQY 151          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEG +P ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +M D  SRF+  GK I H+MGTSTFS++
Sbjct:   57 PEGNYPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-LMPDGTSRFTCKGKTILHYMGTSTFSEY 149          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    4 EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC---GKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            EG+FP ILGHE AGIVES+G+GV++ +PGD VIP Y  +C  CKFC + KTNLC    K++       +M+D  SRF+  GKPIYHFMGTSTFS++
Sbjct:   59 EGVFPVILGHEGAGIVESIGQGVSKFKPGDKVIPLYMPQCGHCKFCLNPKTNLCEKISKIKTPISDQEVMSDGTSRFTCKGKPIYHFMGTSTFSEY 154          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ALETA (Photosystem Q(B) protein OS=Alexandrium tamarense GN=psbA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.658e-26
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            WG    +I ST NR YIGWFG+ M P    A   ++ AFI APPVDIDGIREPV+GSLLYGNNIISGA+IP+S AIG+HFY
Sbjct:   16 WGTVIGFILSTSNRFYIGWFGIFMFPLTGLAIIAYVAAFILAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFY 96          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PROMC (Photosystem Q(B) protein OS=Prorocentrum micans GN=psbA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.260e-25
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  379 WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            W     +I ST +RLYIGWFGVL+ P +  +T  ++ AFI APPVDIDGIREPVSGSLLY NNII+GA+IP+S AIG+HFY
Sbjct:   13 WSVVVAYIVSTNSRLYIGWFGVLLFPLIAVSTVAYVAAFILAPPVDIDGIREPVSGSLLYSNNIITGAVIPSSNAIGVHFY 93          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_AMPOP6.684e-2769.14Photosystem Q(B) protein OS=Amphidinium operculatu... [more]
PSBA_AMPCA6.684e-2769.14Photosystem Q(B) protein OS=Amphidinium carterae G... [more]
PSBA1_ACAM18.729e-2762.96Photosystem Q(B) protein 1 OS=Acaryochloris marina... [more]
ADHX_HORSE8.729e-2761.70Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADHI_RHOS48.729e-2761.05Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
FADH_PICPA1.140e-2659.14S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADHX_BOVIN1.140e-2661.70Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADH4_STRCA1.945e-2657.29Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
PSBA_ALETA5.658e-2666.67Photosystem Q(B) protein OS=Alexandrium tamarense ... [more]
PSBA_PROMC1.260e-2565.43Photosystem Q(B) protein OS=Prorocentrum micans GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
back to top