CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            L+P ILGHE AGIVES+GEGV+ V+PGD VI  +  +C EC  C + + N C  ++       +M+D  SRF+  GK IYHF  TSTF ++
Sbjct:   62 LYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSETQLMSDGTSRFTCKGKSIYHFGNTSTFCEY 150          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   10 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            L+P ILGHE AGIVES+GEGV+ V+PGD VI  +  +C EC  C + + N C  ++       +M+D  SRF+  GK IYHF  TSTF ++
Sbjct:   62 LYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCEY 150          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKPIYHFMGTSTFSQF 282
            P   FP ILGHEA G++ES+GE V   Q GD V+P +   C EC+ CKS K+N C +      +        SRF  + G+ IYHF+  S+FS++
Sbjct:   67 PLARFPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSNTRRYGMTSRFKDSFGEDIYHFLFVSSFSEY 161          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF-SINGKPIYHFMGTSTFSQF 282
            P   FP ILGHEA G+VES+GE V   + GD V+P +   C ECK CKS KTN C +      +        SRF   +G+ I+HF+  S+FS++
Sbjct:   66 PISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEY 160          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.107e-13
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   16 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            P I+GHE  GIVESVGEGV+ V+ GD VI     +C EC  C + K N+C +VR       + ++  SR +  GK  Y ++ T TFS++
Sbjct:   64 PIIMGHEGTGIVESVGEGVSTVKTGDKVIILCLPQCGECNTCLNSKNNICKEVR--LSGTHLTSEGNSRITCKGKTTYQYITTGTFSEY 150          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF-SINGKPIYHFMGTSTFSQF 282
            P   FP ILGHEA G+VES+GE V   + GD V+P +  +C ECK C S K+N C K      +        SRF    G+ I+HF+  S+F+++
Sbjct:   64 PLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEY 158          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   16 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            P I+GHE  GIVESVGEGV+ V+ GD VI     +C ECK C + K N+C ++R       + ++  SR +  GK ++ ++   +FS++
Sbjct:   64 PMIMGHEGVGIVESVGEGVSSVRTGDKVILLCIPQCGECKTCLNSKNNICTEIR--LSKTHLASEGTSRITCKGKLVHQYIALGSFSEY 150          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   13 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 186
            FP +LGHEAAG VESVGEGV  VQPGD+V+  ++A C +C+ CK G+   C     AT
Sbjct:   56 FPFLLGHEAAGTVESVGEGVDSVQPGDYVVLNWRAVCGQCRACKRGRPQYCFSTFNAT 113          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 36/94 (38.30%), Postives = 47/94 (50.00%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            P   FP + GHE AGIV  VG GV +  PGDHV+  +   C +C  C++G  NLC    G   AG  + D   R    G+ +Y      TFS +
Sbjct:   52 PMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLL-AGESVTDGSFRIQARGQNVYPMTLLGTFSPY 144          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 36/94 (38.30%), Postives = 47/94 (50.00%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            P   FP + GHE AGIV  VG GV +  PGDHV+  +   C +C  C++G  NLC    G   AG  + D   R    G+ +Y      TFS +
Sbjct:   52 PMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLL-AGESVTDGSFRIQARGQNVYPMTLLGTFSPY 144          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
ADH6_PONAB4.342e-1848.35Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH6_HUMAN4.342e-1848.35Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADHL5_ARATH4.494e-1542.11Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
ADHL1_ARATH1.307e-1443.16Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADH6_PERMA1.107e-1342.70Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADHL2_ARATH3.220e-1341.05Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADH6_RAT1.224e-1239.33Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
FADH_AMYME7.932e-1255.17NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
ADHB_MYCTU3.014e-1138.30Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO3.014e-1138.30Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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