CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SACOF (Photosystem Q(B) protein OS=Saccharum officinarum GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SACHY (Photosystem Q(B) protein OS=Saccharum hybrid GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PIPCE (Photosystem Q(B) protein OS=Piper cenocladum GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PHAAO (Photosystem Q(B) protein OS=Phalaenopsis aphrodite subsp. formosana GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ORYSJ (Photosystem Q(B) protein OS=Oryza sativa subsp. japonica GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ORYSI (Photosystem Q(B) protein OS=Oryza sativa subsp. indica GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ORYSA (Photosystem Q(B) protein OS=Oryza sativa GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ORYNI (Photosystem Q(B) protein OS=Oryza nivara GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_MAIZE (Photosystem Q(B) protein OS=Zea mays GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_MAGPY (Photosystem Q(B) protein OS=Magnolia pyramidata GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_SACOF3.409e-4797.87Photosystem Q(B) protein OS=Saccharum officinarum ... [more]
PSBA_SACHY3.409e-4797.87Photosystem Q(B) protein OS=Saccharum hybrid GN=ps... [more]
PSBA_PIPCE3.409e-4797.87Photosystem Q(B) protein OS=Piper cenocladum GN=ps... [more]
PSBA_PHAAO3.409e-4797.87Photosystem Q(B) protein OS=Phalaenopsis aphrodite... [more]
PSBA_ORYSJ3.409e-4797.87Photosystem Q(B) protein OS=Oryza sativa subsp. ja... [more]
PSBA_ORYSI3.409e-4797.87Photosystem Q(B) protein OS=Oryza sativa subsp. in... [more]
PSBA_ORYSA3.409e-4797.87Photosystem Q(B) protein OS=Oryza sativa GN=psbA P... [more]
PSBA_ORYNI3.409e-4797.87Photosystem Q(B) protein OS=Oryza nivara GN=psbA P... [more]
PSBA_MAIZE3.409e-4797.87Photosystem Q(B) protein OS=Zea mays GN=psbA PE=3 ... [more]
PSBA_MAGPY3.409e-4797.87Photosystem Q(B) protein OS=Magnolia pyramidata GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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