CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_LOLPR (Photosystem Q(B) protein OS=Lolium perenne GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_LIRTU (Photosystem Q(B) protein OS=Liriodendron tulipifera GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_HORVU (Photosystem Q(B) protein OS=Hordeum vulgare GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_DRIGR (Photosystem Q(B) protein OS=Drimys granadensis GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_DIOEL (Photosystem Q(B) protein OS=Dioscorea elephantipes GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CERDE (Photosystem Q(B) protein OS=Ceratophyllum demersum GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESASLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CALFG (Photosystem Q(B) protein OS=Calycanthus floridus var. glaucus GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_AGRST (Photosystem Q(B) protein OS=Agrostis stolonifera GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ACOCL (Photosystem Q(B) protein OS=Acorus calamus GN=psbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_SPIOG (Photosystem Q(B) protein OS=Spirodela oligorhiza GN=psbA PE=3 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 4.452e-47
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_LOLPR3.409e-4797.87Photosystem Q(B) protein OS=Lolium perenne GN=psbA... [more]
PSBA_LIRTU3.409e-4797.87Photosystem Q(B) protein OS=Liriodendron tulipifer... [more]
PSBA_HORVU3.409e-4797.87Photosystem Q(B) protein OS=Hordeum vulgare GN=psb... [more]
PSBA_DRIGR3.409e-4797.87Photosystem Q(B) protein OS=Drimys granadensis GN=... [more]
PSBA_DIOEL3.409e-4797.87Photosystem Q(B) protein OS=Dioscorea elephantipes... [more]
PSBA_CERDE3.409e-4797.87Photosystem Q(B) protein OS=Ceratophyllum demersum... [more]
PSBA_CALFG3.409e-4797.87Photosystem Q(B) protein OS=Calycanthus floridus v... [more]
PSBA_AGRST3.409e-4797.87Photosystem Q(B) protein OS=Agrostis stolonifera G... [more]
PSBA_ACOCL3.409e-4797.87Photosystem Q(B) protein OS=Acorus calamus GN=psbA... [more]
PSBA_SPIOG4.452e-4796.81Photosystem Q(B) protein OS=Spirodela oligorhiza G... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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