CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_NYMAL (Photosystem Q(B) protein OS=Nymphaea alba GN=psbA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.815e-47
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_MEDSA (Photosystem Q(B) protein OS=Medicago sativa GN=psbA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.815e-47
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERR+SE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNII GAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRDSETLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIICGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_LEMMI (Photosystem Q(B) protein OS=Lemna minor GN=psbA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.815e-47
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGA+IPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_AMBTC (Photosystem Q(B) protein OS=Amborella trichopoda GN=psbA PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 5.815e-47
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNI+SGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNILSGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_VICFA (Photosystem Q(B) protein OS=Vicia faba GN=psbA PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 7.594e-47
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERR+SE LWGRFCNWIT+TENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA IGLHFY
Sbjct:    1 MTAILERRDSENLWGRFCNWITTTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAVIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CHLSC (Photosystem Q(B) protein OS=Chloranthus spicatus GN=psbA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.594e-47
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRE+  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRETTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_ILLOL (Photosystem Q(B) protein OS=Illicium oligandrum GN=psbA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.918e-47
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MT ILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTVILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PSINU (Photosystem Q(B) protein OS=Psilotum nudum GN=psbA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.295e-46
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTA LERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTATLERRESASLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_PICAB (Photosystem Q(B) protein OS=Picea abies GN=psbA PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.692e-46
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAI+ERRES  LWGRFC+WITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAIIERRESANLWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94
[Close]
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_GNEPA (Photosystem Q(B) protein OS=Gnetum parvifolium GN=psbA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.692e-46
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRES  +WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV+GSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESASVWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAIIPTSAAIGLHFY 94
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
PSBA_NYMAL5.815e-4795.74Photosystem Q(B) protein OS=Nymphaea alba GN=psbA ... [more]
PSBA_MEDSA5.815e-4796.81Photosystem Q(B) protein OS=Medicago sativa GN=psb... [more]
PSBA_LEMMI5.815e-4795.74Photosystem Q(B) protein OS=Lemna minor GN=psbA PE... [more]
PSBA_AMBTC5.815e-4796.81Photosystem Q(B) protein OS=Amborella trichopoda G... [more]
PSBA_VICFA7.594e-4795.74Photosystem Q(B) protein OS=Vicia faba GN=psbA PE=... [more]
PSBA_CHLSC7.594e-4796.81Photosystem Q(B) protein OS=Chloranthus spicatus G... [more]
PSBA_ILLOL9.918e-4796.81Photosystem Q(B) protein OS=Illicium oligandrum GN... [more]
PSBA_PSINU1.295e-4696.81Photosystem Q(B) protein OS=Psilotum nudum GN=psbA... [more]
PSBA_PICAB1.692e-4695.74Photosystem Q(B) protein OS=Picea abies GN=psbA PE... [more]
PSBA_GNEPA1.692e-4695.74Photosystem Q(B) protein OS=Gnetum parvifolium GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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