CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYKC_ENCCU (Probable lysyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU04_0580 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.565e-32
Identity = 72/153 (47.06%), Postives = 100/153 (65.36%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDK--DPIEIDFTPPFRRIDMVEELEKIANLQIPKD-LASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++SGM++ + G+  I Y     ++  + +E+ F  PFR I ++EEL     L +  + L   E  + L  AC K  +    P+T +R+LDKL+GH +E  CVNP+F+ +HP  MSPLAK HRSK GLTERFELFIN  E+CNAYTELN+P
Sbjct:  217 TEELISGMVENMFGTDTIVYSPKKREERTESVELSFKRPFRVISILEELNARLGLDLSGETLDREETLEKLLSACDKEGLSVEKPRTLSRVLDKLIGHVIEPQCVNPTFVKDHPIAMSPLAKNHRSKAGLTERFELFINCKEICNAYTELNNP 369          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYKC_ENTBH (Probable lysyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_25548 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.914e-29
Identity = 65/153 (42.48%), Postives = 97/153 (63.40%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHS---NGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIP-KDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            E++LSG++K I GS K  Y       +D+  + +DF+ PF+RID++EEL K  N+++  +++   E  + L     + +I    P+T  R+LD  +G ++E  C+NP+F+   P  MSPLAK HRSK G+TERFE+F N  E+ NAYTELN P
Sbjct:  293 EELLSGLVKLIKGSSKFIYQPCKRETIDEIKVPLDFSTPFKRIDILEELNKSLNIELTGENIEKPETLELLIKKAEELNIIVNNPKTLNRMLDAFIGEYIEPQCINPTFVTGFPICMSPLAKDHRSKAGITERFEMFCNGKELVNAYTELNIP 445          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACV8 (Lysyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=lysS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.177e-23
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TEKM+  +  ++ G+ ++K   N        IDF  P++R+ M++ +++        DL  +   + + + C K +++        +L+D++ G F E T + P+FI ++P+ MSPL K HRS P LTERFEL +N  E+CNAY+ELNDPI
Sbjct:  293 TEKMIEKICLDVNGTTQVKVGDN-------IIDFKAPYKRVTMLDSIKEHTGY----DLTGMNEEQ-IREVCQKLNMEIDDTMGKGKLIDEIFGEFCEGTYIQPTFITDYPKEMSPLTKIHRSNPDLTERFELMVNGKELCNAYSELNDPI 431          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THESQ (Lysyl-tRNA synthetase OS=Thermotoga sp. (strain RQ2) GN=lysS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.333e-23
Identity = 64/151 (42.38%), Postives = 91/151 (60.26%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++  ++K   G+ KI Y          EIDFTPP++R+ M + L++   + I +D   V   K L +  V+ +IK       A L+DKL    +EE  VNP+FII+HP ++SPLAK HR  P LTERFEL I   E+ NA++ELNDP+
Sbjct:  281 TEELIVEVVKRTCGTLKISYQGK-------EIDFTPPWKRVRMRDFLKEKLGVDILEDPDEVLLKK-LEEYGVELEIK-----NRAHLIDKL-RDLVEEELVNPTFIIDHPVVISPLAKRHREDPRLTERFELIIFGREIANAFSELNDPV 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THEP1 (Lysyl-tRNA synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=lysS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.333e-23
Identity = 64/151 (42.38%), Postives = 91/151 (60.26%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++  ++K   G+ KI Y          EIDFTPP++R+ M + L++   + I +D   V   K L +  V+ +IK       A L+DKL    +EE  VNP+FII+HP ++SPLAK HR  P LTERFEL I   E+ NA++ELNDP+
Sbjct:  281 TEELIVEVVKRTCGTLKISYQGK-------EIDFTPPWKRVRMRDFLKEKLGVDILEDPDEVLLKK-LEEYGVELEIK-----NRAHLIDKL-RDLVEEELVNPTFIIDHPVVISPLAKRHREDPRLTERFELIIFGREIANAFSELNDPV 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THEMA (Lysyl-tRNA synthetase OS=Thermotoga maritima GN=lysS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.333e-23
Identity = 64/151 (42.38%), Postives = 91/151 (60.26%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++  ++K   G+ KI Y          EIDFTPP++R+ M + L++   + I +D   V   K L +  V+ +IK       A L+DKL    +EE  VNP+FII+HP ++SPLAK HR  P LTERFEL I   E+ NA++ELNDP+
Sbjct:  281 TEELIVEVVKRTCGTLKISYQGK-------EIDFTPPWKRVRMRDFLKEKLGVDILEDPDEVLLKK-LEEHGVELEIK-----NRAHLIDKL-RDLVEEELVNPTFIIDHPVVISPLAKRHREDPRLTERFELIIFGREIANAFSELNDPV 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_DEHE1 (Lysyl-tRNA synthetase OS=Dehalococcoides ethenogenes (strain 195) GN=lysS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.361e-22
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E+M+S ++KEI+G Y + +    LD       FTPP+ R+ M + +++ A +    D       + LA   ++  +K  P +   +L+D+LVG F+E   + P+F+ +HP  MSPLAK     P LTERFE      E+ NA++ELNDP+
Sbjct:  282 EEMVSSVVKEISGGYTVPFGDTTLD-------FTPPWPRLSMRDAVKQYAGI----DFFDFPTKEALAAEMIRRKLKVDPAKDWGKLVDELVGEFVEPRLIQPTFLTDHPVAMSPLAKQKPEDPRLTERFEAICANMEIANAFSELNDPV 420          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_DEHSC (Lysyl-tRNA synthetase OS=Dehalococcoides sp. (strain CBDB1) GN=lysS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.145e-22
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E+M+S ++KEI+G Y + +         I +DFTPP+ R+ M + +++ A +    D       + LA    +  +K  P +   +L+D+LVG F+E   V P+F+ +HP  MSPLAK     P LTERFE      E+ NA++ELNDP+
Sbjct:  282 EEMVSSVVKEISGGYTLPFGD-------ITLDFTPPWPRLTMRDAVKQYAGI----DFFDFPTKETLAAEMTRRKLKVDPAKDWGKLVDELVGEFVEPHLVQPTFLTDHPVAMSPLAKQKPEDPRLTERFEAICANMEIANAFSELNDPV 420          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_DEHSB (Lysyl-tRNA synthetase OS=Dehalococcoides sp. (strain BAV1) GN=lysS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.145e-22
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E+M+S ++KEI+G Y + +         I +DFTPP+ R+ M + +++ A +    D       + LA    +  +K  P +   +L+D+LVG F+E   V P+F+ +HP  MSPLAK     P LTERFE      E+ NA++ELNDP+
Sbjct:  282 EEMVSSVVKEISGGYTLPFGD-------ITLDFTPPWPRLTMRDAVKQYAGI----DFFDFPTKETLAAEMTRRKLKVDPAKDWGKLVDELVGEFVEPHLVQPTFLTDHPVAMSPLAKQKPEDPRLTERFEAICANMEIANAFSELNDPV 420          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CHLP8 (Lysyl-tRNA synthetase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lysS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.145e-22
Identity = 47/121 (38.84%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   92 EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            EI+  PPFRR+ + + +++   ++I +D +  +      D  ++ D    P  ++ +++D++ G F+E   + P+FI ++PE MSPLAK HRS+PGL ERFEL +   EVCN+++ELNDP+
Sbjct:  326 EINLKPPFRRLTIADSIKEYTGMEI-RDKSEAQLRDIAKDLGLELD----PKISSGKIIDEIFGEFVEPKLIQPTFITDYPEEMSPLAKKHRSEPGLVERFELIVGGKEVCNSFSELNDPV 441          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYKC_ENCCU2.565e-3247.06Probable lysyl-tRNA synthetase, cytoplasmic OS=Enc... [more]
SYKC_ENTBH5.914e-2942.48Probable lysyl-tRNA synthetase, cytoplasmic OS=Ent... [more]
SYK_BACV82.177e-2336.42Lysyl-tRNA synthetase OS=Bacteroides vulgatus (str... [more]
SYK_THESQ6.333e-2342.38Lysyl-tRNA synthetase OS=Thermotoga sp. (strain RQ... [more]
SYK_THEP16.333e-2342.38Lysyl-tRNA synthetase OS=Thermotoga petrophila (st... [more]
SYK_THEMA6.333e-2342.38Lysyl-tRNA synthetase OS=Thermotoga maritima GN=ly... [more]
SYK_DEHE15.361e-2236.00Lysyl-tRNA synthetase OS=Dehalococcoides ethenogen... [more]
SYK_DEHSC9.145e-2236.67Lysyl-tRNA synthetase OS=Dehalococcoides sp. (stra... [more]
SYK_DEHSB9.145e-2236.67Lysyl-tRNA synthetase OS=Dehalococcoides sp. (stra... [more]
SYK_CHLP89.145e-2238.84Lysyl-tRNA synthetase OS=Chlorobaculum parvum (str... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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