CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LACLA (Lysyl-tRNA synthetase OS=Lactococcus lactis subsp. lactis GN=lysS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 48/152 (31.58%), Postives = 81/152 (53.29%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTA-RLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +   + K + G   ++Y       D  EI+    F+R+ MV+ ++++A +    ++   EA     +     DI      T+   ++++    ++EET + P+F+  HP+ +SPLAK +   P  T+RFELFIN  E  NA++ELNDPI
Sbjct:  286 TEGIFQHVAKTVVGQDVLEY-------DGKEINVGGKFKRVHMVDAIKEVAGVDFWPEMTFEEATALAKE----HDIHVEKHFTSVGHIINEFFEKYVEETLIQPTFVFGHPKEISPLAKMNEKDPRFTDRFELFINGKEYANAFSELNDPI 426          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRR6 (Lysyl-tRNA synthetase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+R+ MV+ + +I  +   +D+   EA    A+  V  +           +++     F+EET + P+F+  HP  +SPLAK +      T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAKSVKGDGPVNYQGT-------EIKINEPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYTE---VGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRPN (Lysyl-tRNA synthetase OS=Streptococcus pneumoniae GN=lysS PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+R+ MV+ + +I  +   +D+   EA    A+  V  +           +++     F+EET + P+F+  HP  +SPLAK +      T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAKSVKGDGPVNYQGT-------EIKINEPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYTE---VGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRPI (Lysyl-tRNA synthetase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+R+ MV+ + +I  +   +D+   EA    A+  V  +           +++     F+EET + P+F+  HP  +SPLAK +      T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAKSVKGDGPVNYQGT-------EIKINEPFKRVHMVDAIREITGVDFWQDMTLKEAKAIAAEKKVPVEKHYTE---VGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRP4 (Lysyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+R+ MV+ + +I  +   +D+   EA    A+  V  +           +++     F+EET + P+F+  HP  +SPLAK +      T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAKSVKGDGPVNYQGT-------EIKINEPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYTE---VGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRP2 (Lysyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+R+ MV+ + +I  +   +D+   EA    A+  V  +           +++     F+EET + P+F+  HP  +SPLAK +      T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAKSVKGDGPVNYQGT-------EIKINEPFKRVHMVDAIREITGVDFWQDMTLEEAKAIAAEKKVPVEKHYTE---VGHIINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAES (Lysyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  + +E+ GS K++Y+         EID    ++R+ +V+ ++++  +    D  +V +++       + DI+         +L++     +EET + P+FI  HP  +SPLAK + +    T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TENMVRHIAQEVFGSAKVQYNDE-------EIDLESSWKRLHIVDAVKEVTGV----DFYNVNSDEEAIRLAKEHDIEITENMKYGHILNEFFEQKVEETLIQPTFIYGHPIEISPLAKKNPNDERFTDRFELFIVGREHANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAEQ (Lysyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  + +E+ GS K++Y+         EID    ++R+ +V+ ++++  +    D  +V +++       + DI+         +L++     +EET + P+FI  HP  +SPLAK + +    T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TENMVRHIAQEVFGSAKVQYNDE-------EIDLESSWKRLHIVDAVKEVTGV----DFYNVNSDEEAIRLAKEHDIEITENMKYGHILNEFFEQKVEETLIQPTFIYGHPIEISPLAKKNPNDERFTDRFELFIVGREHANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MYCMS (Lysyl-tRNA synthetase OS=Mycoplasma mycoides subsp. mycoides SC GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 46/148 (31.08%), Postives = 82/148 (55.41%), Query Frame = 2
Query:   14 LSGMIKEITGSYKIKYHSNGL-DKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            L  + +EI        +SN + + + ++ID + PF+R+ MV+ ++++  +   K++   +A +      V  +      ++   +++     F+E T V P+F+  HP+ +SPLAK + S P  T+RFELFI   E  NA++ELNDPI
Sbjct:  285 LMNLTEEIFRVCNAAVNSNSIIEYNNVKIDLSKPFKRLHMVDGIKQVTGVDFWKEMTVQQALELAKKHKVHVE---KHQESVGHIINLFYEEFVESTIVEPTFVYGHPKEISPLAKSNPSDPRFTDRFELFILGREYANAFSELNDPI 429          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MYCGE (Lysyl-tRNA synthetase OS=Mycoplasma genitalium GN=lysS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   95 IDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTAR-LLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            I+   PF +I MVE ++K+  +    D  SV+ ++       K  +K    Q   + +++     F E+T + P+F+ ++P+ +SPLAK   S P  T+RFELFIN  E+ NAY+ELNDP+
Sbjct:  303 INLKTPFHKITMVELIKKVTGI----DFNSVKDDQSAILLAEKHHVKLAKHQQNKQHIINLFFEQFCEQTLIEPTFVTHYPKAVSPLAKQDPSNPEFTQRFELFINGKEIANAYSELNDPL 419          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_LACLA9.793e-1631.58Lysyl-tRNA synthetase OS=Lactococcus lactis subsp.... [more]
SYK_STRR61.279e-1531.79Lysyl-tRNA synthetase OS=Streptococcus pneumoniae ... [more]
SYK_STRPN1.279e-1531.79Lysyl-tRNA synthetase OS=Streptococcus pneumoniae ... [more]
SYK_STRPI1.279e-1531.79Lysyl-tRNA synthetase OS=Streptococcus pneumoniae ... [more]
SYK_STRP41.279e-1531.79Lysyl-tRNA synthetase OS=Streptococcus pneumoniae ... [more]
SYK_STRP21.279e-1531.79Lysyl-tRNA synthetase OS=Streptococcus pneumoniae ... [more]
SYK_STAES1.279e-1531.79Lysyl-tRNA synthetase OS=Staphylococcus epidermidi... [more]
SYK_STAEQ1.279e-1531.79Lysyl-tRNA synthetase OS=Staphylococcus epidermidi... [more]
SYK_MYCMS1.279e-1531.08Lysyl-tRNA synthetase OS=Mycoplasma mycoides subsp... [more]
SYK_MYCGE1.279e-1536.36Lysyl-tRNA synthetase OS=Mycoplasma genitalium GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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