CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYKM_SCHPO (Lysyl-tRNA synthetase, mitochondrial OS=Schizosaccharomyces pombe GN=msk1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.279e-15
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHF-LEETCVNPSFIINHPEIMSPLAK-----YHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++  +   I G+ +I   +  L+K          F  I+ +  L+K  N+++     S    K L     + +I  P   T A LLDKL     L+    +P F+INHPE+MSPLAK     Y   +  +++RFEL+I  +E+CNAY E NDP+
Sbjct:  313 TEELIRFICLTINGNLQISGQTVDLEKG---------FEVIEFIPALQKELNVELSPLDNSENCRKQLISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSPKFVINHPEVMSPLAKSDIKLYGAVEQRISKRFELYIGGYEICNAYEEENDPV 460          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRGC (Lysyl-tRNA synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=lysS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.671e-15
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++      + G   I Y          EI    PF+R+ MV+ +++I  +   +D++  EA     +  V  +           +++     F+EET   P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHAAISVCGDGPINYQGT-------EIKINEPFKRVHMVDAIKEITGVDFWQDMSFEEATALAKEKNVPLEKHFTE---VGHVINAFFEEFVEETLTQPTFIYGHPVAVSPLAKKNPEDPRFTDRFELFIMTKEYANAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LISW6 (Lysyl-tRNA synthetase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=lysS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.671e-15
Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E ++S + K++ G+ +I Y          ++D TP +RR+ M + +++   +    D  +V +++   +   K D+      T   +L++    ++EE  + P+F+  HP  +SPLAK ++     T+RFELFI   E  NA++ELNDPI
Sbjct:  289 EGLVSTVCKQVNGTTEITYGE-------YKVDLTPNWRRVHMADVVKEYVGV----DFWNVTSDEEARELAKKHDVAITEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPLAKKNKEDERFTDRFELFIVGREHANAFSELNDPI 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRTD (Lysyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=lysS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.182e-15
Identity = 49/151 (32.45%), Postives = 74/151 (49.01%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+RI MV+ +++I  +   +D+   EA     +  V  +          ++++     F+EET   P+F+  HP  +SPLAK +   P  T+RFELFI   E  NAY+ELNDPI
Sbjct:  288 TEGIIQHAAKAVKGDGPVNYQGT-------EIKINEPFKRIHMVDAIKEITGVDFWQDMTFEEAVALANEKHVPVEKHYTE---VGQIINAFFEEFVEETLTQPTFVYGHPVAVSPLAKKNPEDPRFTDRFELFIMTKEYGNAYSELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK2_METMA (Lysyl-tRNA synthetase 2 OS=Methanosarcina mazei GN=lysS2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.849e-15
Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQI----PKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++S ++ ++TGSY+++            I+   P++RI M + L++ A L I     +DL  +     + D            ++    L  L    +E+  ++P+FI + P   SPLAK HR K G  ERFELF+N  E+ N Y+ELNDP+
Sbjct:  301 TESLVSELVFKLTGSYEVQMGEK-------TINLRSPWKRISMEDALKEYAGLDIFAHSIEDLKKIAIENRIEDY--------EKAKSHGEFLALLFEGLVEDKLIDPTFIYDFPVENSPLAKNHREKAGFVERFELFLNGWELANGYSELNDPL 440          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_XANCP (Lysyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=lysS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++    + + G+ ++ +       D  +ID  P FRR  M +E  +  N +I    A       L   C +  IK  P     +LL ++    +E T V P+FI +HP  +SPLA+   ++PG T+RFELFIN  E+ N ++ELNDP
Sbjct:  294 TEQVIRDTAQGVLGTTQVSW-------DGADIDLAPAFRRWRM-DEAVRHHNPEI--SAADCTDRAALLRHCERLKIKVKPSYGWGKLLLEIFESTVEHTLVQPTFITDHPVEVSPLARASDTEPGYTDRFELFINGKELANGFSELNDP 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_XANC8 (Lysyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++    + + G+ ++ +       D  +ID  P FRR  M +E  +  N +I    A       L   C +  IK  P     +LL ++    +E T V P+FI +HP  +SPLA+   ++PG T+RFELFIN  E+ N ++ELNDP
Sbjct:  294 TEQVIRDTAQGVLGTTQVSW-------DGADIDLAPAFRRWRM-DEAVRHHNPEI--SAADCTDRAALLRHCERLKIKVKPSYGWGKLLLEIFESTVEHTLVQPTFITDHPVEVSPLARASDTEPGYTDRFELFINGKELANGFSELNDP 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_XANC5 (Lysyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++    + + G+ ++ +       D  +ID  P FRR  M +E  +  N +I    A     + L   C +  I+  P     +LL ++    +E T V P+FI +HP  +SPLA+   ++PG T+RFELFIN  E+ N ++ELNDP
Sbjct:  294 TEQVIRDTAQTVLGTTQVSW-------DGADIDLAPAFRRWRM-DEAVRHHNPEI--SAADCTDREALLRHCERLKIRVKPSYDWGKLLLEIFEATVEHTLVQPTFITDHPVEVSPLARSSDTEPGYTDRFELFINGKELANGFSELNDP 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_XANAC (Lysyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=lysS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++    + + G+ ++ +       D  +ID  P FRR  M +E  +  N +I    A     + L   C +  I+  P     +LL ++    +E T V P+FI +HP  +SPLA+   ++PG T+RFELFIN  E+ N ++ELNDP
Sbjct:  294 TEQVIRDTAQSVLGTTQVSW-------DGADIDLAPAFRRWRM-DEAVRHHNPEI--SAADCTDREALLRHCERLKIRVKPSYGWGKLLLEIFEATVEHTLVQPTFITDHPVEVSPLARSSDTEPGYTDRFELFINGKELANGFSELNDP 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_TOLAT (Lysyl-tRNA synthetase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 48/149 (32.21%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE+ML  + + I G+ KI+Y  +G  ++ IEIDF  PF R+ MVE + K  N    ++L ++E    +A    +  ++         ++  +     E     P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  296 TEEMLRTLAQNIHGTTKIRYAKDG--EEGIEIDFGQPFARMTMVESILKYGNDVKAEELTTLEGAIAVAK---RHHVELMKSWELGHVITAIFEETAEHMLHQPTFITEYPAAVSPLARRNDDNPEVTDRFEFFIGGREIANGFSELND 439          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYKM_SCHPO1.279e-1533.76Lysyl-tRNA synthetase, mitochondrial OS=Schizosacc... [more]
SYK_STRGC1.671e-1532.45Lysyl-tRNA synthetase OS=Streptococcus gordonii (s... [more]
SYK_LISW61.671e-1530.00Lysyl-tRNA synthetase OS=Listeria welshimeri serov... [more]
SYK_STRTD2.182e-1532.45Lysyl-tRNA synthetase OS=Streptococcus thermophilu... [more]
SYK2_METMA2.849e-1532.26Lysyl-tRNA synthetase 2 OS=Methanosarcina mazei GN... [more]
SYK_XANCP3.722e-1534.00Lysyl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYK_XANC83.722e-1534.00Lysyl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYK_XANC53.722e-1533.33Lysyl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYK_XANAC3.722e-1533.33Lysyl-tRNA synthetase OS=Xanthomonas axonopodis pv... [more]
SYK_TOLAT3.722e-1532.21Lysyl-tRNA synthetase OS=Tolumonas auensis (strain... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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