CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAHJ (Lysyl-tRNA synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 48/151 (31.79%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  + +E+ GS K++Y+         EID    + R+ +V+ +++   +    D   +++++    A  +  I+         +L++     +EET + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  287 TESMVRHIAQEVFGSAKVQYNEE-------EIDLESAWTRLHIVDAVKEATGV----DFYQIKSDEEAIAAAKEHGIEITNNMKYGHILNEFFEQKVEETLIQPTFIYGHPIEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPI 426          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_XANOP (Lysyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.860e-15
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++    + + G+ ++ +       D  +ID  P FRR  M +E  +  N +I    A       L   C +  I+  P     +LL ++    +E T V P+FI +HP  +SPLA+   ++PG T+RFELFIN  E+ N ++ELNDP
Sbjct:  294 TEQVIRDTAQSVLGTTQVSW-------DGADIDLAPAFRRWRM-DEAVRHHNPEI--SAADCTDRDALLRHCERLKIRVKPSYDWGKLLLEIFEATVEHTLVQPTFITDHPVEVSPLARSSDTEPGYTDRFELFINGKELANGFSELNDP 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_XANCB (Lysyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.860e-15
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++    + + G+ ++ +       D  +ID  P FRR  M +E  +  N +I    A       L   C +  IK  P     +LL ++    +E T V P+FI +HP  +SPLA+   ++PG T+RFELFIN  E+ N ++ELNDP
Sbjct:  294 TEQVIRDTAQGVLGTTQVSW-------DGADIDLAPAFRRWRM-DEAVRHHNPEI--SAADCTDRAALLRHCERLKIKVKPSYGWGKLLLEIFEATVEHTLVQPTFITDHPVEVSPLARASDTEPGYTDRFELFINGKELANGFSELNDP 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LISMF (Lysyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.860e-15
Identity = 45/150 (30.00%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E ++S + K++ G+ +I Y           +D TP +RRI M + +++   +    D  +V +++   +   K ++      T   +L++    ++EE  + P+F+  HP  +SPLAK ++     T+RFELFI   E  NA++ELNDPI
Sbjct:  289 EGLVSTVCKQVNGTTEITYGE-------YNVDLTPNWRRIHMADAVKEYVGV----DFWNVTSDEEARELAKKHNVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPLAKKNKEDDRFTDRFELFIVGREHANAFSELNDPI 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_AERHH (Lysyl-tRNA synthetase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=lysS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.860e-15
Identity = 47/149 (31.54%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE+ML  + ++I G  KI+Y   G  ++ + IDF  PF+R+ MV+ + K        DLA++E    +A    +  I+         ++  +    +E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  295 TEEMLRTLAQDILGDTKIRYAKEG--EEGLTIDFGQPFQRLSMVDSILKYNPDVTRDDLATLEKATAVAK---RLHIELMKSWELGHVITAIFEETVEHMLLQPTFITEYPAAVSPLARRNDQNPDVTDRFEFFIGGRELANGFSELND 438          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_XANOM (Lysyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lysS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.348e-15
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++    + + G+ ++ +       D  +ID  P FRR  M +E  +  N +I    A       L   C +  I+  P     +LL ++    +E T V P+FI +HP  +SPLA+   ++PG T+RFELFIN  E+ N ++ELNDP
Sbjct:  294 TEQVIRDTAQSVLGTTQVSW-------DGADIDLAPAFRRWRM-DEAVRHHNPEI--SAADCTDRDALLRHCERLKIRVKPSYGWGKLLLEIFEATVEHTLVQPTFITDHPVEVSPLARSSDTEPGYTDRFELFINGKELANGFSELNDP 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACCN (Lysyl-tRNA synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=lysS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.348e-15
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + K + G+  I+Y  +       EI+  P + R+ MV+ +++   +   K + SVE  + LA    + D++         ++++     +EE  + P+FI  HP  +SPLAK +      T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TENMIAHIAKRVLGTTTIQYGEH-------EINLEPEWTRLHMVDAIKQYCGVDFWKPM-SVEEARALAK---EHDVEIKDTMEVGHIINEFFEQKVEEKLIQPTFIYGHPVEISPLAKKNDEDSRFTDRFELFIVAREHANAFTELNDPI 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MYCCT (Lysyl-tRNA synthetase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=lysS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.291e-15
Identity = 41/131 (31.30%), Postives = 77/131 (58.78%), Query Frame = 2
Query:   65 SNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQ-TTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            S+ ++ + ++ID + PF+R+ MV+ ++++  +   +++   +A     +   K ++     Q +   +++     F+E T V P+F+  HP+ +SPLAK + + P  T+RFELFI   E  NA++ELNDPI
Sbjct:  303 SSVIEYNNVKIDLSKPFKRLHMVDGIKQVTGVDFWQEMTVEQA----LELAKKHNVYVEKHQESVGHIINLFYEEFVESTIVEPTFVYGHPKEISPLAKSNPNDPRFTDRFELFIIGREYANAFSELNDPI 429          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CHLAA (Lysyl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=lysS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.291e-15
Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            E+MLS +   + G+  I Y          E+DF PP+ RI M   +     + I + +  ++A   L +A     ++     + A+ +D+L   F++     P+FII++P  MSPLAK    +P  TERFE FI   E+ NA+TELNDP
Sbjct:  280 EEMLSEICLAVHGTTTITYQGR-------ELDFRPPWPRIAMATAIADRTGIDITQ-ITDLDA---LQEAISARGLRVERKASWAKQVDELFSEFVQPHLFQPTFIIDYPVAMSPLAKRIPDRPDFTERFEAFIAGMEIGNAFTELNDP 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MOOTA (Lysyl-tRNA synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=lysS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.083e-14
Identity = 43/150 (28.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E+M++ + +E  G+  + Y  + LD        TPP+ R+ M+E ++K   +   +   + +A +    A +   ++  P     ++++++    +E   + P+FI+++P  +SPLAK  +  P  T RFE FI   E+ NA++ELNDPI
Sbjct:  279 EEMVAYVAREALGTTVVTYQGDRLD-------LTPPWPRLTMLEAIKKYYGVDFDQLPTAEDARR----AAISLGLEIEPGMERGKIINEVFEATVEPHLIQPTFILDYPVAISPLAKRKKENPDFTYRFEAFIAGRELANAFSELNDPI 417          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_STAHJ3.722e-1531.79Lysyl-tRNA synthetase OS=Staphylococcus haemolytic... [more]
SYK_XANOP4.860e-1533.33Lysyl-tRNA synthetase OS=Xanthomonas oryzae pv. or... [more]
SYK_XANCB4.860e-1534.00Lysyl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYK_LISMF4.860e-1530.00Lysyl-tRNA synthetase OS=Listeria monocytogenes se... [more]
SYK_AERHH4.860e-1531.54Lysyl-tRNA synthetase OS=Aeromonas hydrophila subs... [more]
SYK_XANOM6.348e-1533.33Lysyl-tRNA synthetase OS=Xanthomonas oryzae pv. or... [more]
SYK_BACCN6.348e-1532.45Lysyl-tRNA synthetase OS=Bacillus cereus subsp. cy... [more]
SYK_MYCCT8.291e-1531.30Lysyl-tRNA synthetase OS=Mycoplasma capricolum sub... [more]
SYK_CHLAA8.291e-1534.23Lysyl-tRNA synthetase OS=Chloroflexus aurantiacus ... [more]
SYK_MOOTA1.083e-1428.67Lysyl-tRNA synthetase OS=Moorella thermoacetica (s... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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