CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAA8 (Lysyl-tRNA synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=lysS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 47/151 (31.13%), Postives = 77/151 (50.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  +  E+ GS K++Y+          ID    + R+ +V+ +++   +    D   V++++       +  I+         +L++     +EET + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TESMVRHIANEVLGSAKVQYNGE-------TIDLESAWTRLHIVDAVKEATGV----DFYEVKSDEEAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAA3 (Lysyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300) GN=lysS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 47/151 (31.13%), Postives = 77/151 (50.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  +  E+ GS K++Y+          ID    + R+ +V+ +++   +    D   V++++       +  I+         +L++     +EET + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TESMVRHIANEVLGSAKVQYNGE-------TIDLESAWTRLHIVDAVKEATGV----DFYEVKSDEEAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAA1 (Lysyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=lysS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 47/151 (31.13%), Postives = 77/151 (50.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  +  E+ GS K++Y+          ID    + R+ +V+ +++   +    D   V++++       +  I+         +L++     +EET + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TESMVRHIANEVLGSAKVQYNGE-------TIDLESAWTRLHIVDAVKEATGV----DFYEVKSDEEAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_LEUMM (Lysyl-tRNA synthetase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=lysS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +       ++   KI Y          EID    F R  +V+ +++   +   ++++  EA K   D  VK++           +++     F+E+T V P+F+  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TEGIFKAAASVVSDDLKITYQGT-------EIDLGTKFARKHLVDLIKEQTGIDFWQEMSVEEAQKLADDNHVKYE----KYWGVGHIINAFFEEFVEDTLVQPTFVYGHPVEVSPLAKKNTDDPRFTDRFELFIMGSEYANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRSY (Lysyl-tRNA synthetase OS=Streptococcus suis (strain 05ZYH33) GN=lysS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.412e-14
Identity = 46/151 (30.46%), Postives = 75/151 (49.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+RI MV+ +++   +   ++++  EA    A+  V  +          ++++     ++E T + P+F+  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHTAKAVVGDGPVTYQGT-------EIAIHEPFKRIHMVDAIKEQTGVDFWQEMSFEEAKALAAEHKVPVE---KHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVSPLAKKNDEDPRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STRS2 (Lysyl-tRNA synthetase OS=Streptococcus suis (strain 98HAH33) GN=lysS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.412e-14
Identity = 46/151 (30.46%), Postives = 75/151 (49.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++    K + G   + Y          EI    PF+RI MV+ +++   +   ++++  EA    A+  V  +          ++++     ++E T + P+F+  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  288 TEGIIQHTAKAVVGDGPVTYQGT-------EIAIHEPFKRIHMVDAIKEQTGVDFWQEMSFEEAKALAAEHKVPVE---KHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVSPLAKKNDEDPRFTDRFELFIMTKEYGNAFTELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MYCMO (Lysyl-tRNA synthetase OS=Mycoplasma mobile GN=lysS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.412e-14
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   92 EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            EID   PFRR++MVE L +   + + K   S E  K LA    K  IK         ++++L   F+E+  + P+F+  HP  +SPLA  ++  P  T+R ELFI   E  N +TEL DPI
Sbjct:  302 EIDLNKPFRRLNMVEALNEKLGIDLYK--ISFEDAKVLAK---KHHIKVESYFKIGHIINELFELFIEKDLIQPTFVYGHPIEISPLANKNKKNPNFTDRAELFIGTKEYANMFTELTDPI 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAAW (Lysyl-tRNA synthetase OS=Staphylococcus aureus (strain MW2) GN=lysS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  +  E+ GS K++Y+          ID    + R+ +V+ +++   +    D   V+++        +  I+         +L++     +EET + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TESMVRHIANEVLGSAKVQYNGE-------TIDLESAWTRLHIVDAVKEATGV----DFYEVKSDDEAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_STAAS (Lysyl-tRNA synthetase OS=Staphylococcus aureus (strain MSSA476) GN=lysS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M+  +  E+ GS K++Y+          ID    + R+ +V+ +++   +    D   V+++        +  I+         +L++     +EET + P+FI  HP  +SPLAK +   P  T+RFELFI   E  NA+TELNDPI
Sbjct:  286 TESMVRHIANEVLGSAKVQYNGE-------TIDLESAWTRLHIVDAVKEATGV----DFYEVKSDDEAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPI 425          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MYCHJ (Lysyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=lysS PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.115e-14
Identity = 48/121 (39.67%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   92 EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            +I+F   F R DM+E   K+ N     DL S      L +   K  +K  P      L++K    F+E T +NP+FII HP  +SPLAK + + P  T R ELFI   E  N + ELNDPI
Sbjct:  304 KINFLEKFARYDMIEITSKLMNF----DLKSANFAD-LVEKAKKEGVKIEPFFKKGHLINKFFEKFVEPTLINPTFIIGHPIEISPLAKSNPNNPNFTLRAELFICGKEFANMFDELNDPI 419          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_STAA81.847e-1431.13Lysyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYK_STAA31.847e-1431.13Lysyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYK_STAA11.847e-1431.13Lysyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYK_LEUMM1.847e-1431.79Lysyl-tRNA synthetase OS=Leuconostoc mesenteroides... [more]
SYK_STRSY2.412e-1430.46Lysyl-tRNA synthetase OS=Streptococcus suis (strai... [more]
SYK_STRS22.412e-1430.46Lysyl-tRNA synthetase OS=Streptococcus suis (strai... [more]
SYK_MYCMO2.412e-1438.02Lysyl-tRNA synthetase OS=Mycoplasma mobile GN=lysS... [more]
SYK_STAAW3.150e-1431.13Lysyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYK_STAAS3.150e-1431.13Lysyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYK_MYCHJ4.115e-1439.67Lysyl-tRNA synthetase OS=Mycoplasma hyopneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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