CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig371 contig Csv1_Contig371:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SULSO (Lysyl-tRNA synthetase OS=Sulfolobus solfataricus GN=lysS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.560e-21
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLL-DKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +L  ++K++T S KI Y          EIDF  PF+RI M + L +I    + KD+ S+  N+ L +   K+++     Q    L+ +KL    +  T  NP+FI ++P   +PL K HR+KPGL ERFE+FI   EV NAYTELNDPI
Sbjct:  279 TEDLLKSVVKKVTNSTKIVYGK-------YEIDFEGPFKRISMYDSLSEI----LGKDVESMSDNE-LKELMKKYNLTPRGNQYVRGLMIEKLFDKLVTPTLTNPTFITDYPIETTPLCKPHRNKPGLVERFEMFIAGMEVANAYTELNDPI 418          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_DEIRA (Lysyl-tRNA synthetase OS=Deinococcus radiodurans GN=lysS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.037e-21
Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEEL-EKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKP-GLTERFELFINKHEVCNAYTELND 448
            E +LSG+ KE+ GSY+ +Y    LD       FTPPF R+D +  L E +  L    D   ++ ++  A    +F      P  + +LLDKL G F+E    NP+F+++HP ++SPLAK HRS+P  +TERFE+F +  E+ NA++ELND
Sbjct:  300 EDLLSGLAKEVHGSYQFEYQGKTLD-------FTPPFARVDYLGGLREHVPGL----DFDPLDLDRLRAFCDERFPQWKGVP--SYKLLDKLFGEFVEPLLSNPTFVMDHPAVISPLAKKHRSRPEAVTERFEVFCSGFELANAFSELND 436          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CHLTE (Lysyl-tRNA synthetase OS=Chlorobium tepidum GN=lysS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.037e-21
Identity = 46/121 (38.02%), Postives = 76/121 (62.81%), Query Frame = 2
Query:   92 EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            EI+  PPFRR+ + + + +   ++I       ++   L D      ++  P  ++ +++D++ G F+E   + P+FI ++PE MSPLAK HRS+PGL ERFEL +   EVCN+++ELNDP+
Sbjct:  326 EINLKPPFRRLTIADSIREYTGMEIRG-----KSEAQLRDIAKDLGLELDPKISSGKIIDEIFGEFVEPKLIQPTFITDYPEEMSPLAKKHRSEPGLVERFELIVGGKEVCNSFSELNDPV 441          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNS3 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9311) GN=lysS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.475e-21
Identity = 53/152 (34.87%), Postives = 88/152 (57.89%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPP-QTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++++ + +++ G+ +I Y         +E+D TP +RR  M E +++   L    D  S E  +   +A    ++  P    T  RLL++   H +E   + P+F++++P+ +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  278 TEQLIASVCEQVCGTTRISYQG-------VEVDLTPSWRRATMHELVQEATGL----DFTSFETREAAVEAMRAANLPAPDKADTVGRLLNEAFEHAVEPNLIQPTFVLDYPQEISPLARKHRSKPGLVERFELFIVGRETANAFSELTDPL 418          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_AQUAE (Lysyl-tRNA synthetase OS=Aquifex aeolicus GN=lysS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.475e-21
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE M   ++++  G+ K+KY          E+DF+PPF+++   + L++         L  +E  + LA    + +I      T A+LLDK+     EE  + P+F+I+ P+I+SPLAK HR  P L ERFEL I ++EV NAYTELNDP
Sbjct:  380 TEDMFVYLLEKTLGTLKVKYGE-------WELDFSPPFKKVRYFDLLKEKTGKDKDFFLKDLEGLRKLAK---ELEIPDVERMTHAKLLDKVFEKVAEEDLIQPTFVIDFPKILSPLAKTHREDPDLVERFELIIARYEVANAYTELNDP 519          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACFR (Lysyl-tRNA synthetase OS=Bacteroides fragilis GN=lysS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.539e-21
Identity = 53/151 (35.10%), Postives = 86/151 (56.95%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TEKM+  +  ++ G+ ++K   N        I+F  P++R+ M+  +++        DL  +   + + + C K +++        +L+D++ G F E T + P+FI ++P  MSPL K HR  P LTERFEL +N  E+CNAY+ELNDPI
Sbjct:  293 TEKMIEKICLDVNGTTEVKVGDN-------IINFKAPYKRVTMLGAIKEHTGY----DLTGMNEEQ-IREVCKKLNMEIDDTMGKGKLIDEIFGEFCEGTYIQPTFITDYPIEMSPLTKKHRDNPELTERFELMVNGKELCNAYSELNDPI 431          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BACFN (Lysyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=lysS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.539e-21
Identity = 53/151 (35.10%), Postives = 86/151 (56.95%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TEKM+  +  ++ G+ ++K   N        I+F  P++R+ M+  +++        DL  +   + + + C K +++        +L+D++ G F E T + P+FI ++P  MSPL K HR  P LTERFEL +N  E+CNAY+ELNDPI
Sbjct:  293 TEKMIEKICLDVNGTTEVKVGDN-------IINFKAPYKRVTMLGAIKEHTGY----DLTGMNEEQ-IREVCKKLNMEIDDTMGKGKLIDEIFGEFCEGTYIQPTFITDYPIEMSPLTKKHRDNPELTERFELMVNGKELCNAYSELNDPI 431          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNPW (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain WH7803) GN=lysS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.725e-20
Identity = 55/152 (36.18%), Postives = 84/152 (55.26%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPP-QTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G  ++ Y          EID TPP+RR  M E +E+   L    D  +       A+A     +  P    +  RLL++   H +E   + P+F++++PE +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  278 TESMIASVCEQVCGGTRLTYQGT-------EIDLTPPWRRATMHELVEEATGL----DFTAFADRAAAAEAMTAKGLPVPDKADSVGRLLNEAFEHAVEANLIQPTFVLDYPEEISPLARKHRSKPGLVERFELFIVGRETANAFSELIDPV 418          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PROMM (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=lysS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.942e-20
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIP--KDLASVEANKYLADACVKFDIKCPPP-QTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++S +  +I GS +I Y         IEID TPP+RR  M E +++   L     KDLA        A A  +  ++ P    +  RLL++     +E + + P+F++++P  +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  295 TEQLISSVCTQICGSTRITYQG-------IEIDLTPPWRRASMHELVQEATGLDFMGFKDLAVA------ASAMARVGLEVPSKADSVGRLLNEAFEQAVEVSLIQPTFVLDYPIEISPLARQHRSKPGLVERFELFIVGRETANAFSELIDPL 435          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PARD8 (Lysyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=lysS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.942e-20
Identity = 54/132 (40.91%), Postives = 78/132 (59.09%), Query Frame = 2
Query:   68 NGLDKDPIE---IDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            NG  +  I+   I F  PFRR+ ++E +++        DL     ++  A  C +  ++        +L+D++ G F E T + P+FII++P  MSPL K HRSKPGLTERFEL +N  E+ NAY+ELNDPI
Sbjct:  305 NGTSESTIDGKTISFKAPFRRLPILEAIKEKTGY----DLEGKTEDEIRA-ICKELKMEIDDTMGKGKLIDEIFGEFCEGTFIQPTFIIDYPVEMSPLTKMHRSKPGLTERFELMVNGKELANAYSELNDPI 431          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_SULSO1.560e-2141.45Lysyl-tRNA synthetase OS=Sulfolobus solfataricus G... [more]
SYK_DEIRA2.037e-2140.67Lysyl-tRNA synthetase OS=Deinococcus radiodurans G... [more]
SYK_CHLTE2.037e-2138.02Lysyl-tRNA synthetase OS=Chlorobium tepidum GN=lys... [more]
SYK_SYNS33.475e-2134.87Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_AQUAE3.475e-2138.67Lysyl-tRNA synthetase OS=Aquifex aeolicus GN=lysS ... [more]
SYK_BACFR4.539e-2135.10Lysyl-tRNA synthetase OS=Bacteroides fragilis GN=l... [more]
SYK_BACFN4.539e-2135.10Lysyl-tRNA synthetase OS=Bacteroides fragilis (str... [more]
SYK_SYNPW1.725e-2036.18Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PROMM2.942e-2038.31Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_PARD82.942e-2040.91Lysyl-tRNA synthetase OS=Parabacteroides distasoni... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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