CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_HAHCH (Lysyl-tRNA synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=lysS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 44/154 (28.57%), Postives = 77/154 (50.00%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIE---IDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADAC-VKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+ML  + +E  G+ +++  S   D D ++    DF  PF R+ +VE +          D+ +++  K +A    +         +    + +K V H L    + P+FI  +P  +SPLA+ +   P +T+RFE F+   E+ N ++ELNDP
Sbjct:  285 TEEMLRWVAQEALGTTEVRNTSKNTDGDVVDEIIYDFGKPFIRMTVVESILHFNPELTLGDIDNMDGAKKVATGLGIPLKASWGLGKIQIEIFEKTVEHRL----MQPTFITEYPTEVSPLARRNDDNPFVTDRFEFFVGGREIANGFSELNDP 434          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PROM5 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=lysS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.260e-11
Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE ++  ++     S  I Y           IDF+ P++RI M   +++   +        +   K  ++  +  +I  P   T  RLL+++    +E   + P+F+ ++P  +SPLA+ H     + +RFELFI   E+ NA++EL DP+
Sbjct:  286 TEDLIKNIVLSCCDSLVINYQDK-------VIDFSKPWKRISMKNVVKEYTGIDFDSFDGDLNKAKKFSEE-INIEIS-PKINTLGRLLNEVFEQKVESQLIEPTFVTDYPIEISPLARRHPKNKEMVQRFELFIAGRELANAFSELIDPV 427          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_HAES2 (Lysyl-tRNA synthetase OS=Haemophilus somnus (strain 2336) GN=lysS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.260e-11
Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQ--IPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++L  +  +I G+  + Y         ++ DF  PF RI M E + K    Q  + +DL   +    +A    K  I+         L++ +     E   + P+F++ HP  +SPLA+ +   P +T+RFELFI   E+ N ++ELND
Sbjct:  289 TEELLRKLALDILGTTIVPYGD-------LKFDFGKPFERITMHEAILKYGAEQGIVKEDLYDFDRAVAVAQ---KLGIEVQKSWGLGSLVNAIFEEVAEHHLIQPTFLMAHPAEISPLARRNDENPDVTDRFELFIGGREIGNGFSELND 429          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_VIBVY (Lysyl-tRNA synthetase OS=Vibrio vulnificus (strain YJ016) GN=lysS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 42/153 (27.45%), Postives = 73/153 (47.71%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKI----ANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++LS +  E+ GS  + Y  +        ++F   + R+ M E ++      A +Q   +   ++    +        ++  P  T  +LL+++ G   E   + P+FI  +P  +SPLA+     P  T+RFE FI   EV N ++ELND
Sbjct:  293 TEELLSSVALEVLGSTSMPYGEH-------TVEFGGTYTRMSMFEAIKHYNPDHAQIQALTE-EDIQNRDLMVSIAKSVHVEVEPFWTCGQLLEEIFGETAEPKLMQPTFITGYPADISPLARRSDDNPFFTDRFEFFIGGREVANGFSELND 437          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_VIBVU (Lysyl-tRNA synthetase OS=Vibrio vulnificus GN=lysS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 42/153 (27.45%), Postives = 73/153 (47.71%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKI----ANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++LS +  E+ GS  + Y  +        ++F   + R+ M E ++      A +Q   +   ++    +        ++  P  T  +LL+++ G   E   + P+FI  +P  +SPLA+     P  T+RFE FI   EV N ++ELND
Sbjct:  293 TEELLSSVALEVLGSTSMPYGEH-------TVEFGGTYTRMSMFEAIKHYNPDHAQIQALTE-EDIQNRDLMVSIAKSVHVEVEPFWTCGQLLEEIFGETAEPKLMQPTFITGYPADISPLARRSDDNPFFTDRFEFFIGGREVANGFSELND 437          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_VIBPA (Lysyl-tRNA synthetase OS=Vibrio parahaemolyticus GN=lysS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKI----ANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++LS +  E+ GS  + Y  +        ++F   + R+ M E ++      A +Q   +   ++  + +        ++  P  T  +LL+++ G   E   + P+FI  +P  +SPLA+     P  T+RFE FI   EV N ++ELND
Sbjct:  288 TEELLSSVALEVLGSTSMPYGED-------TVEFGGKYARMSMFEAIKHYNPDHAQIQALTE-EDLQNRELMVSIAKSVHVEVEPFWTCGQLLEEIFGETAEPKLMQPTFITGYPADISPLARRSDDNPFFTDRFEFFIGGREVANGFSELND 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BURP1 (Lysyl-tRNA synthetase OS=Burkholderia pseudomallei (strain 1710b) GN=lysS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 44/154 (28.57%), Postives = 73/154 (47.40%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCV----NPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++     +  G+  I+Y          E+D   PFRR+ + + ++K A       L+    + +L     +  +    P      +  L     EET       P+FII++P  +SPLA+   +  G+TERFELF+   E+ N ++ELNDP
Sbjct:  293 TERLIRQAAVDALGTATIRYQGR-------ELDLAKPFRRLTITQAIQKYAPNYTDGQLSD---DAFLRGELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESDTVAGITERFELFVTGREIANGFSELNDP 436          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BORPD (Lysyl-tRNA synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=lysS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 48/154 (31.17%), Postives = 72/154 (46.75%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCV----NPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE +L       TGS  + Y          E+D + PF R+ + E + K A        A ++   ++     K       P      L  L     EET      NP++II++P  +SPLA+   ++PG+TERFELF+   E+ N ++ELNDP
Sbjct:  291 TEHVLRQAAIAATGSAVLTYQDR-------ELDLSRPFDRLTICEAILKYAPAYTQ---AQLDDAAFVRAELKKLGADVDGPVLARAGLGALQLALFEETAEAQLWNPTYIIDYPVEVSPLARASDTRPGITERFELFMTGREIANGFSELNDP 434          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SHIF8 (Lysyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=lysS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 40/149 (26.85%), Postives = 73/149 (48.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE +   + ++I G  ++ Y         + +DF  PF ++ M E ++K        DL + ++ K +A++     I         R++ ++     E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  294 TESLFRTLAQDILGKTEVTYGD-------VTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAES---IGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELND 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SHIBS (Lysyl-tRNA synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=lysS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 40/149 (26.85%), Postives = 73/149 (48.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE +   + ++I G  ++ Y         + +DF  PF ++ M E ++K        DL + ++ K +A++     I         R++ ++     E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  294 TESLFRTLAQDILGKTEVTYGD-------VTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAES---IGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELND 432          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_HAHCH2.496e-1128.57Lysyl-tRNA synthetase OS=Hahella chejuensis (strai... [more]
SYK_PROM53.260e-1127.15Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_HAES23.260e-1129.80Lysyl-tRNA synthetase OS=Haemophilus somnus (strai... [more]
SYK_VIBVY4.258e-1127.45Lysyl-tRNA synthetase OS=Vibrio vulnificus (strain... [more]
SYK_VIBVU4.258e-1127.45Lysyl-tRNA synthetase OS=Vibrio vulnificus GN=lysS... [more]
SYK_VIBPA4.258e-1127.45Lysyl-tRNA synthetase OS=Vibrio parahaemolyticus G... [more]
SYK_BURP14.258e-1128.57Lysyl-tRNA synthetase OS=Burkholderia pseudomallei... [more]
SYK_BORPD4.258e-1131.17Lysyl-tRNA synthetase OS=Bordetella petrii (strain... [more]
SYK_SHIF85.561e-1126.85Lysyl-tRNA synthetase OS=Shigella flexneri serotyp... [more]
SYK_SHIBS5.561e-1126.85Lysyl-tRNA synthetase OS=Shigella boydii serotype ... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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