CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK1_ECOL6 (Lysyl-tRNA synthetase OS=Escherichia coli O6 GN=lysS PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 40/149 (26.85%), Postives = 73/149 (48.99%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE +   + ++I G  ++ Y         + +DF  PF ++ M E ++K        DL + ++ K +A++     I         R++ ++     E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  294 TESLFRTLAQDILGKTEVTYGD-------VTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAES---IGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELND 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PASMU (Lysyl-tRNA synthetase OS=Pasteurella multocida GN=lysS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 45/153 (29.41%), Postives = 74/153 (48.37%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACV----KFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++L  +  +I G+  + Y         +E DF  PF RI M + +     L+   +   V+ + Y  D  V    K  I+         L++ +     E   + P+F++ HP  +SPLA+ +   P +T+RFELFI   E+ N ++ELND
Sbjct:  289 TEELLRKLAMDILGTTIVPYGE-------LEFDFGKPFERITMHDAI-----LKYGAEKGIVKEDLYDFDRAVAVAKKLGIEVQKSWGLGSLVNVIFEEVAEHHLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELND 429          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_MYCHP (Lysyl-tRNA synthetase OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=lysS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 2
Query:   20 GMIKEITGSYKIK-YHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            G+ K +   + IK    NG D     + F  PF+R++M++ + +  N+ I K        + + +   K  IK         ++++L   ++EET + P+F+  HP  +SP A         T R E FI   E  N +TELNDPI
Sbjct:  282 GVFKHLMNKFNIKEVKFNGFD-----MTFNFPFKRVNMIDAMSEKINVDIRK-----LNEEQMFELAKKHGIKIEKFFRYGHIINELFEKYVEETLMEPTFVYGHPIEISPTAAIDPDDKRFTTRAETFIGTKEFANMFTELNDPI 417          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_HAEIE (Lysyl-tRNA synthetase OS=Haemophilus influenzae (strain PittEE) GN=lysS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQ--IPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE++L  +  +I G+  +KY         +E DF  PF RI + +   K    +  + +DL   +  K  A+   +  I+         +++ +     E   + P+F++ HP  +SPLA+ +   P +T+RFELFI   E+ N ++ELND
Sbjct:  290 TEELLRKLAIDILGTTIVKYGD-------LEFDFGKPFERITLHDATVKYGADKGIVKEDLYDFDRAKATAE---RLGIEVQKSWGLGSIVNAIFEEVAEHHLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELND 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_ERWT9 (Lysyl-tRNA synthetase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=lysS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 42/149 (28.19%), Postives = 70/149 (46.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE +   + +++ GS  + Y          + DF  PF ++ M E + K        DLA  + +  +A +     IK        RL+ ++     E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  294 TESLFRTLAQDVLGSTVVPYGDQ-------QFDFGKPFEKLTMKEAILKYRPQTDLADLADFDKSVAIAQS---LGIKVEKSWGLGRLVTEIFEETAEAHLIQPTFITEYPAEVSPLARRNDMDPEITDRFEFFIGGREIGNGFSELND 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BURVG (Lysyl-tRNA synthetase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=lysS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 43/154 (27.92%), Postives = 74/154 (48.05%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVN----PSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++     +  G+  I+Y          E+D   PF R+ + + ++K A       L+    + +L     +  +    P      +  L     EET  +    P++II++P  +SPLA+   + PG+TERFELF+   E+ N ++ELNDP
Sbjct:  293 TEQLIRQAAIDALGTATIQYQGR-------ELDLAKPFHRLTITQAIQKYAPQYTDGQLSD---DAFLRTELKRLGVDVSQPAFLNAGIGALQLALFEETAESQLWEPTYIIDYPVEVSPLARASDTVPGITERFELFMTGREIANGFSELNDP 436          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SHIDS (Lysyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lysS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 40/149 (26.85%), Postives = 72/149 (48.32%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE +   + + I G  ++ Y         + +DF  PF ++ M E ++K        DL + ++ K +A++     I         R++ ++     E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  294 TESLFRTLAQNILGKTEVTYGD-------VTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAES---IGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELND 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PECCP (Lysyl-tRNA synthetase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=lysS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 41/149 (27.52%), Postives = 70/149 (46.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE +   + +++ GS  ++Y            DF  PF ++ M E + K        DL  +E    +A +     IK        R++ ++     E + + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  294 TENLFRTLTQDVLGSTTVEYGDQ-------TFDFGKPFEKLTMREAICKYRPETNVADLDDLEKATAIAQS---LGIKIEKSWGLGRIVTEIFEETAESSLIQPTFITEYPAEVSPLARRNDQNPEITDRFEFFIGGREIGNGFSELND 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_ENT38 (Lysyl-tRNA synthetase OS=Enterobacter sp. (strain 638) GN=lysS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 41/149 (27.52%), Postives = 72/149 (48.32%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELND 448
            TE +   + + I G+ ++ Y            DF  PF ++ M E ++K        DL + ++ K +A++     IK        R++ ++     E   + P+FI  +P  +SPLA+ +   P +T+RFE FI   E+ N ++ELND
Sbjct:  294 TESLFRTLAQNILGTTEVPYGDE-------VFDFGKPFVKLTMREAIKKYRPETEMADLDNYDSAKAIAES---IGIKVEKSWGQGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDENPEITDRFEFFIGGREIGNGFSELND 432          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_BURTA (Lysyl-tRNA synthetase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=lysS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 44/154 (28.57%), Postives = 72/154 (46.75%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCV----NPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDP 451
            TE+++     +  G+  I+Y          E+D   PF R+ + + ++K A       L+    + +L     +  +    P      +  L     EET       P+FII++P  +SPLA+   +  G+TERFELFI   E+ N ++ELNDP
Sbjct:  293 TERLIRQAAVDALGTATIQYQGR-------ELDLAQPFHRLTITQAIQKYAPSYTDGQLSD---DAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESDTVAGITERFELFITGREIANGFSELNDP 436          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK1_ECOL65.561e-1126.85Lysyl-tRNA synthetase OS=Escherichia coli O6 GN=ly... [more]
SYK_PASMU7.263e-1129.41Lysyl-tRNA synthetase OS=Pasteurella multocida GN=... [more]
SYK_MYCHP7.263e-1129.45Lysyl-tRNA synthetase OS=Mycoplasma hominis (strai... [more]
SYK_HAEIE7.263e-1128.48Lysyl-tRNA synthetase OS=Haemophilus influenzae (s... [more]
SYK_ERWT97.263e-1128.19Lysyl-tRNA synthetase OS=Erwinia tasmaniensis (str... [more]
SYK_BURVG7.263e-1127.92Lysyl-tRNA synthetase OS=Burkholderia vietnamiensi... [more]
SYK_SHIDS9.486e-1126.85Lysyl-tRNA synthetase OS=Shigella dysenteriae sero... [more]
SYK_PECCP9.486e-1127.52Lysyl-tRNA synthetase OS=Pectobacterium carotovoru... [more]
SYK_ENT389.486e-1127.52Lysyl-tRNA synthetase OS=Enterobacter sp. (strain ... [more]
SYK_BURTA9.486e-1128.57Lysyl-tRNA synthetase OS=Burkholderia thailandensi... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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