CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THETH (Lysyl-tRNA synthetase OS=Thermus thermophilus GN=lysS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.554e-20
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E++LSG++  + GS+++ Y    L+       F PPFRRI  VE L++ A L  P D   +E  +  ADA      + P      +LLDKL G ++E    +P+F+ + P  +SPLAK HR KPGL ER++L+    E+   Y+ELNDP+
Sbjct:  278 EELLSGLVLHLFGSHEVPYQGRVLN-------FKPPFRRISFVEALKEKAGL--PFDPLDLERLRLWADAHHPELSQVP----NYKLLDKLFGIYVEPELQDPTFVFDFPLAISPLAKRHREKPGLVERWDLYAGGMELAPCYSELNDPL 414          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THET8 (Lysyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lysS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.554e-20
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E++LSG++  + GS+++ Y    L+       F PPFRRI  VE L++ A L  P D   +E  +  ADA      + P      +LLDKL G ++E    +P+F+ + P  +SPLAK HR KPGL ER++L+    E+   Y+ELNDP+
Sbjct:  278 EELLSGLVLHLFGSHEVPYQGRVLN-------FKPPFRRISFVEALKEKAGL--PFDPLDLERLRLWADAHHPELSQVP----NYKLLDKLFGIYVEPELQDPTFVFDFPLAISPLAKRHREKPGLVERWDLYAGGMELAPCYSELNDPL 414          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THET2 (Lysyl-tRNA synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lysS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.554e-20
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E++LSG++  + GS+++ Y    L+       F PPFRRI  VE L++ A L  P D   +E  +  ADA      + P      +LLDKL G ++E    +P+F+ + P  +SPLAK HR KPGL ER++L+    E+   Y+ELNDP+
Sbjct:  278 EELLSGLVLHLFGSHEVPYQGRVLN-------FKPPFRRISFVEALKEKAGL--PFDPLDLERLRLWADAHHPELSQVP----NYKLLDKLFGIYVEPELQDPTFVFDFPLAISPLAKRHREKPGLVERWDLYAGGMELAPCYSELNDPL 414          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNPX (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain WH8102) GN=lysS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.554e-20
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPP-PQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+M+S + +E+ GS +I Y          EID +PP+RR  M E +E+   L    D  S  + +  A A     +  P    +  RLL++     +E T + P+F+ ++P  +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  282 TEQMVSAVCQEVCGSCQITYQDT-------EIDLSPPWRRATMHELVEEATGL----DFNSFSSREAAAVAMTGKGLHAPELADSVGRLLNEAFEQAVETTLIQPTFVTDYPVEISPLARPHRSKPGLVERFELFIVGREHANAFSELTDPV 422          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PROM3 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9303) GN=lysS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.554e-20
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPP-QTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++S +  +I GS +I Y         IEID TPP+RR  M E +++   L    D          A A  +  ++ P    +  RLL++     +E + + P+F++++P  +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  295 TEQLISSVCTQICGSTRITYQG-------IEIDLTPPWRRASMHELVQEATGL----DFMGFADRAVAASAMARAGLEVPSKADSVGRLLNEAFEQAVEVSLIQPTFVLDYPIEISPLARQHRSKPGLVERFELFIVGRETANAFSELIDPL 435          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PORG3 (Lysyl-tRNA synthetase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=lysS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.554e-20
Identity = 53/151 (35.10%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+ML  +  ++ G+ ++K            IDF  P+RR+ M+E + +   + I     S      L   C K  ++        +L+D++ G   E+  + P+FI ++P+ MSPL K HR+ P LTERFEL +N  E+ NAY+ELNDPI
Sbjct:  295 TEQMLERICMDVLGTTQVKVGEK-------LIDFKAPYRRVTMIEAIHEHTGIDI-----SGMNEAELRQVCDKLGVEHNETMGKGKLIDEIFGEKCEKNYIQPTFITDYPKEMSPLTKEHRTNPELTERFELMVNGKELANAYSELNDPI 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNWW (Lysyl-tRNA synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=lysS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.460e-19
Identity = 46/150 (30.67%), Postives = 89/150 (59.33%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E ++S ++ ++ GS +I +          ++DFTPP+RR+ M++ +++ A L    D + +++++    A  +  ++     +   L++++   F+E+  + P+F+  HP  +SPLAK +   P  T+RFELFI + E+ NA++ELNDPI
Sbjct:  281 EDLISAVMLKVNGSMQIDFEGE-------QLDFTPPWRRVTMLDAIKEAAGL----DFSLIKSDEDACQAAWQLGLEVKAGASRGELINEIFEQFVEDKLIQPTFVYGHPVEVSPLAKRNLETPEFTDRFELFIMQREIANAFSELNDPI 419          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PELPB (Lysyl-tRNA synthetase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=lysS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.460e-19
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2
Query:   92 EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            EI   PPFRR+ +++ + +     I     S E  +Y A       ++  P  ++ +++D++ G F+E   + P+FII++P  MSPLAK H S+PG+ ERFEL I   EVCN+++ELNDP+
Sbjct:  326 EISLKPPFRRLSIIDAITEYTGQNIAGQ--SEEQLRYTAK---DLGLELDPKISSGKIIDEIFGEFVEPKLIQPTFIIDYPTEMSPLAKEHPSQPGIVERFELIIGGKEVCNSFSELNDPV 441          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOPE (Lysyl-tRNA synthetase OS=Clostridium perfringens GN=lysS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.907e-19
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E M++ + +++ GS K+ Y          EIDFTPP+RRI MV+ +++ A +   +  +  EA     +  ++F  K     T   +L+ L   + E+  + P+F+I++P  +SPL K  R     TERFE F+   EVCNAY+ELNDPI
Sbjct:  289 ENMIAYVCEKVNGSTKVTYEGT-------EIDFTPPWRRITMVDAVKEFAGIDFNEIKSDEEAQAIAKEKNLEFP-KPLDKVTKGEVLNMLFEEYGEDKLIQPTFLIDYPVEISPLTKKKRGNEMFTERFEGFVYGREVCNAYSELNDPI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOP1 (Lysyl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=lysS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.907e-19
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E M++ + +++ GS K+ Y          EIDFTPP+RRI MV+ +++ A +   +  +  EA     +  ++F  K     T   +L+ L   + E+  + P+F+I++P  +SPL K  R     TERFE F+   EVCNAY+ELNDPI
Sbjct:  289 ENMIAYVCEKVNGSTKVTYEGT-------EIDFTPPWRRITMVDAVKEFAGIDFNEIKSDEEAQAIAKEKNLEFP-KPLDKVTKGEVLNMLFEEYGEDKLIQPTFLIDYPVEISPLTKKKRGNEMFTERFEGFVYGREVCNAYSELNDPI 430          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_THETH6.554e-2038.67Lysyl-tRNA synthetase OS=Thermus thermophilus GN=l... [more]
SYK_THET86.554e-2038.67Lysyl-tRNA synthetase OS=Thermus thermophilus (str... [more]
SYK_THET26.554e-2038.67Lysyl-tRNA synthetase OS=Thermus thermophilus (str... [more]
SYK_SYNPX6.554e-2038.16Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PROM36.554e-2036.84Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_PORG36.554e-2035.10Lysyl-tRNA synthetase OS=Porphyromonas gingivalis ... [more]
SYK_SYNWW1.460e-1930.67Lysyl-tRNA synthetase OS=Syntrophomonas wolfei sub... [more]
SYK_PELPB1.460e-1938.84Lysyl-tRNA synthetase OS=Pelodictyon phaeoclathrat... [more]
SYK_CLOPE1.907e-1936.00Lysyl-tRNA synthetase OS=Clostridium perfringens G... [more]
SYK_CLOP11.907e-1936.00Lysyl-tRNA synthetase OS=Clostridium perfringens (... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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