CB322191

Overview
NameCB322191
Unique NameCB322191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig371 contig Csv1_Contig371:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PORGI (Lysyl-tRNA synthetase OS=Porphyromonas gingivalis GN=lysS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.490e-19
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+ML  +  ++ G+ ++K            IDF  P++R+ M+E + +   + I     S      L   C K  ++        +L+D++ G   E+  + P+FI ++P+ MSPL K HR+ P LTERFEL +N  E+ NAY+ELNDPI
Sbjct:  295 TEQMLERICMDVLGTTQMKVGGK-------LIDFKAPYKRVTMIEAIHEHTGIDI-----SGMNEAELRQVCDKLGVEHNETMGKGKLIDEIFGEKCEKNYIQPTFITDYPKEMSPLTKEHRTNPELTERFELMVNGKELANAYSELNDPI 433          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_CLOPS (Lysyl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=lysS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.490e-19
Identity = 53/150 (35.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    5 EKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            E M++ + +++ GS K+ Y          EIDFTPP+RRI MV+ +++ A +   +  +  EA     +  ++F  K     T   +L+ L   + E+  + P+F++++P  +SPL K  R     TERFE F+   EVCNAY+ELNDPI
Sbjct:  289 ENMIAYVCEKVNGSTKVTYEGT-------EIDFTPPWRRITMVDAVKEFAGIDFNEIKSDEEAQAIAKEKNLEFP-KPLDKVTKGEVLNMLFEEYGEDKLIQPTFLVDYPVEISPLTKKKRGNEMFTERFEGFVYGREVCNAYSELNDPI 430          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_AZOPC (Lysyl-tRNA synthetase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=lysS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.490e-19
Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+ML  +  EI GS ++K            I+F  P+RRI M++ +E+   + I    A +  N+ L + C    I+     ++ +L+D++ G   E   + P+FII++P+ MSPL K HR    LTERFEL +N  E+ NAY+ELNDPI
Sbjct:  288 TEQMLEHICIEILGSTELKIGE-------YIINFKAPYRRITMIDVIEENTGVNI----AGMNENQ-LREVCRFLHIEEDKTMSSGKLIDEIFGKKCEWKYIQPTFIIDYPKEMSPLCKCHRQNAELTERFELIVNGFELANAYSELNDPI 426          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_FERNB (Lysyl-tRNA synthetase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=lysS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.236e-18
Identity = 54/151 (35.76%), Postives = 89/151 (58.94%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++++ +++++ G+ KI Y          EIDFT P+RR+ M + +++   + I +D     A K LA+  V+ DI          +++KL    +E+  + P+F++ HP  +SPLAK HR  P +TERFEL I   E+ NA++ELNDP+
Sbjct:  278 TEELITYLVEQLYGTTKITYQGQ-------EIDFTRPWRRVKMRDFIKENLGVDIIEDSDETMA-KVLAENGVEVDIN-----DRGHMIEKL-WDLVEDKVIQPTFLLEHPVEISPLAKKHREDPRVTERFELIIYGREMANAFSELNDPV 414          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_THETN (Lysyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=lysS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.614e-18
Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPP---QTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE++ + + +++ GS KI Y          EID TPP++RI MV+ +++   +   K     EA K   D  +  ++K P     +  A + D+LV    E+  + P+F++++P  +SPLAK  R  P  T RFE FI   EV NA++ELNDPI
Sbjct:  288 TEQLFAYVAEKVNGSTKIIYQGT-------EIDLTPPWKRITMVDAIKEYVGIDFEKVATDEEARKIAKD--LNLELKKPDMKKGEVIALVFDELV----EKHLIQPTFVMDYPVEVSPLAKRKRDNPAFTSRFEAFIYGREVANAFSELNDPI 428          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNSC (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=lysS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.108e-18
Identity = 55/152 (36.18%), Postives = 81/152 (53.29%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPP-PQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+M+S + +E+ G+  I Y          EID  PP+RR  M E ++    L    D     + +  A A     +  P    +  RLL++     +E T + P+F+ ++P  +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  282 TEQMVSAVCEEVCGTTTITYQGT-------EIDLAPPWRRATMHELVQDATGL----DFNGFSSREEAAAAMTAKGLHAPELADSVGRLLNEAFEQAVETTLIQPTFVTDYPVEISPLARPHRSKPGLVERFELFIVGREHANAFSELTDPV 422          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PELLD (Lysyl-tRNA synthetase OS=Pelodictyon luteolum (strain DSM 273) GN=lysS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.108e-18
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   92 EIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            EI    PFRR+ + + + +    +I +     E      D  ++ D    P   + +++D++ G F+E   + P+FI ++P  MSPLAK HRSKPGL ERFEL     E+CN+++ELNDP+
Sbjct:  316 EISLEAPFRRLTIADSIREYTGAEI-EGKTETELRNLAKDLGLELD----PKIGSGKIIDEIFGEFVEPKLIQPTFITDYPTEMSPLAKPHRSKPGLVERFELIAGGKEICNSFSELNDPV 431          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNY3 (Lysyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=lysS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE +++   + + G+ KI Y          EID TPP++RI M E ++    +   +      A +    A +     CP   +   LL+      +E T + P+FII+ P  +SPLAK HRSKPGL ERFELF+   E+ N+++EL DPI
Sbjct:  294 TEALVTTAAQAVLGTLKITYQGE-------EIDLTPPWKRITMHEAVQLETGIDFSQFTDLETAKQAATKAGIGVPEDCP---SLGHLLNHAFEQKVEGTLMQPTFIIDFPVEISPLAKPHRSKPGLVERFELFVYGRELANSFSELTDPI 434          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_SYNS9 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9902) GN=lysS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCP-PPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE M++ + +++ G  +I Y          +ID TPP+RR  M E +E+   L         +A    A+A     ++ P    +  RLL++     +E + + P+F+ ++P  +SPLA+ HRSKPGL ERFELFI   E  NA++EL DP+
Sbjct:  282 TEAMIAEVCQQVCGGTRIHYQGT-------DIDLTPPWRRATMHELVEEATGLNFEAFTTRAQA----AEAMEAAGLEVPGAADSVGRLLNEAFEQRVEASLIQPTFVTDYPIEISPLARKHRSKPGLVERFELFIVGRETANAFSELIDPV 422          
BLAST of CB322191 vs. ExPASy Swiss-Prot
Match: SYK_PELTS (Lysyl-tRNA synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=lysS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 52/151 (34.44%), Postives = 84/151 (55.63%), Query Frame = 2
Query:    2 TEKMLSGMIKEITGSYKIKYHSNGLDKDPIEIDFTPPFRRIDMVEELEKIANLQIPKDLASVEANKYLADACVKFDIKCPPPQTTARLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKYHRSKPGLTERFELFINKHEVCNAYTELNDPI 454
            TE+++S +  E  G+ KI+Y          EID  PP+ RI M+E ++  A L      ++ EA K +  A +  ++   P  +   +++K+    +E   + P+F++++P  +SPLAK     P LT RFELFI   E+ NA++ELNDPI
Sbjct:  294 TEELISAVAVEALGTTKIEYQGT-------EIDLAPPWPRIPMLETIKVHAGLDFGALKSAEEAFKAVEQAGIGLELD--PSDSWGTIVNKVFEEVVEPKLIQPTFVVDYPVEISPLAKRKAEDPELTYRFELFIYGREIANAFSELNDPI 435          
The following BLAST results are available for this feature:
BLAST of CB322191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SYK_PORGI2.490e-1934.44Lysyl-tRNA synthetase OS=Porphyromonas gingivalis ... [more]
SYK_CLOPS2.490e-1935.33Lysyl-tRNA synthetase OS=Clostridium perfringens (... [more]
SYK_AZOPC2.490e-1937.75Lysyl-tRNA synthetase OS=Azobacteroides pseudotric... [more]
SYK_FERNB1.236e-1835.76Lysyl-tRNA synthetase OS=Fervidobacterium nodosum ... [more]
SYK_THETN1.614e-1835.71Lysyl-tRNA synthetase OS=Thermoanaerobacter tengco... [more]
SYK_SYNSC2.108e-1836.18Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PELLD2.108e-1837.19Lysyl-tRNA synthetase OS=Pelodictyon luteolum (str... [more]
SYK_SYNY36.134e-1835.76Lysyl-tRNA synthetase OS=Synechocystis sp. (strain... [more]
SYK_SYNS96.134e-1834.87Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PELTS6.134e-1834.44Lysyl-tRNA synthetase OS=Pelotomaculum thermopropi... [more]

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Properties
Property NameValue
Genbank descriptionEST0313 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB272 similar to lysyl tRNA synthetase (acc# AAM20403), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322191 ID=CB322191; Name=CB322191; organism=Citrus sinensis; type=EST; length=455bp
TACTGAGAAAATGTTGAGCGGGATGATCAAGGAAATTACAGGGAGCTATA
AAATCAAATATCATTCCAATGGGCTTGATAAGGATCCAATTGAAATTGAT
TTCACTCCCCCTTTCAGAAGGATAGACATGGTAGAGGAGTTGGAGAAGAT
AGCAAACCTCCAAATACCAAAGGACTTGGCCAGTGTAGAAGCAAACAAAT
ACTTAGCAGATGCATGTGTGAAGTTTGATATCAAATGCCCCCCTCCTCAG
ACAACAGCTCGATTATTAGATAAACTTGTGGGGCACTTTCTCGAAGAGAC
GTGTGTAAATCCTTCTTTCATCATTAACCACCCTGAGATAATGAGTCCTC
TGGCAAAATATCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTG
TTCATTAATAAGCATGAGGTTTGCAATGCATATACGGAGCTGAATGATCC
TATTG
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